Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.35■□□□□ 0.53
PCNAP12004 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC18.35■□□□□ 0.53
PCNAP12004 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
PCNAP12004 LETM1P2-201ENST00000597330 2178 ntBASIC18.35■□□□□ 0.53
PCNAP12004 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC18.35■□□□□ 0.53
PCNAP12004 GOLGA6L5P-202ENST00000515341 1828 ntBASIC18.35■□□□□ 0.53
PCNAP12004 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC18.35■□□□□ 0.53
PCNAP12004 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 KRT16P1-201ENST00000399124 1418 ntBASIC18.34■□□□□ 0.53
PCNAP12004 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 AC006333.2-201ENST00000607957 2099 ntBASIC18.34■□□□□ 0.53
PCNAP12004 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 USP39-202ENST00000409025 1946 ntTSL 5 BASIC18.34■□□□□ 0.53
PCNAP12004 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
PCNAP12004 AC004980.1-204ENST00000429707 299 ntBASIC18.34■□□□□ 0.53
PCNAP12004 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.34■□□□□ 0.53
PCNAP12004 RARRES2P10-201ENST00000564312 460 ntBASIC18.34■□□□□ 0.53
PCNAP12004 AF186192.3-201ENST00000583427 947 ntBASIC18.34■□□□□ 0.53
PCNAP12004 RPS15-203ENST00000586096 570 ntTSL 2 BASIC18.34■□□□□ 0.53
PCNAP12004 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.34■□□□□ 0.53
PCNAP12004 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC18.34■□□□□ 0.53
PCNAP12004 AL353708.3-201ENST00000610272 989 ntBASIC18.34■□□□□ 0.53
PCNAP12004 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.34■□□□□ 0.53
PCNAP12004 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
PCNAP12004 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.34■□□□□ 0.53
PCNAP12004 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
PCNAP12004 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCNAP12004 SPAG9-202ENST00000357122 4761 ntAPPRIS P2 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCNAP12004 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PCNAP12004 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCNAP12004 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
PCNAP12004 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
PCNAP12004 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.33■□□□□ 0.53
PCNAP12004 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 ABHD17AP1-201ENST00000358206 933 ntBASIC18.33■□□□□ 0.52
PCNAP12004 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
PCNAP12004 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PCNAP12004 PTPA-216ENST00000432651 857 ntTSL 2 BASIC18.33■□□□□ 0.52
PCNAP12004 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.33■□□□□ 0.52
PCNAP12004 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.33■□□□□ 0.52
PCNAP12004 AC018470.1-201ENST00000624790 3129 ntBASIC18.33■□□□□ 0.52
PCNAP12004 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
PCNAP12004 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
PCNAP12004 GAS2L1P1-201ENST00000420145 1480 ntBASIC18.33■□□□□ 0.52
PCNAP12004 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC18.32■□□□□ 0.52
PCNAP12004 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC18.32■□□□□ 0.52
PCNAP12004 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PCNAP12004 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PCNAP12004 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PCNAP12004 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC18.32■□□□□ 0.52
PCNAP12004 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.32■□□□□ 0.52
PCNAP12004 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.32■□□□□ 0.52
PCNAP12004 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.32■□□□□ 0.52
PCNAP12004 AC073195.1-201ENST00000607241 877 ntBASIC18.32■□□□□ 0.52
PCNAP12004 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
PCNAP12004 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC18.32■□□□□ 0.52
PCNAP12004 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC18.32■□□□□ 0.52
PCNAP12004 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC18.32■□□□□ 0.52
PCNAP12004 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PCNAP12004 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCNAP12004 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC18.31■□□□□ 0.52
PCNAP12004 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
PCNAP12004 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PCNAP12004 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms