Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC22.67■■□□□ 1.22
COL1A1P02452 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 MTMR9LP-203ENST00000426597 1545 ntBASIC22.67■■□□□ 1.22
COL1A1P02452 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC22.67■■□□□ 1.22
COL1A1P02452 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.67■■□□□ 1.22
COL1A1P02452 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.67■■□□□ 1.22
COL1A1P02452 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC22.67■■□□□ 1.22
COL1A1P02452 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC22.66■■□□□ 1.22
COL1A1P02452 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 KRT18P23-201ENST00000435622 1283 ntBASIC22.66■■□□□ 1.22
COL1A1P02452 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC22.66■■□□□ 1.22
COL1A1P02452 SDHD-206ENST00000528182 754 ntTSL 3 BASIC22.66■■□□□ 1.22
COL1A1P02452 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC22.66■■□□□ 1.22
COL1A1P02452 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC22.66■■□□□ 1.22
COL1A1P02452 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC22.66■■□□□ 1.22
COL1A1P02452 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
COL1A1P02452 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC22.66■■□□□ 1.22
COL1A1P02452 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC22.66■■□□□ 1.22
COL1A1P02452 MIR3652-201ENST00000579335 131 ntBASIC22.66■■□□□ 1.22
COL1A1P02452 AC010240.3-201ENST00000607688 395 ntBASIC22.66■■□□□ 1.22
COL1A1P02452 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC22.66■■□□□ 1.22
COL1A1P02452 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC22.66■■□□□ 1.22
COL1A1P02452 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.65■■□□□ 1.22
COL1A1P02452 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 AL161938.1-201ENST00000569833 2180 ntBASIC22.65■■□□□ 1.22
COL1A1P02452 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC22.65■■□□□ 1.22
COL1A1P02452 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
COL1A1P02452 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC22.65■■□□□ 1.22
COL1A1P02452 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
COL1A1P02452 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL1A1P02452 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC22.64■■□□□ 1.22
COL1A1P02452 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL1A1P02452 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC22.64■■□□□ 1.22
COL1A1P02452 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
COL1A1P02452 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
COL1A1P02452 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC22.64■■□□□ 1.21
COL1A1P02452 AC246785.2-201ENST00000432512 513 ntBASIC22.64■■□□□ 1.21
COL1A1P02452 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC22.64■■□□□ 1.21
COL1A1P02452 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC22.64■■□□□ 1.21
COL1A1P02452 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 AL136038.4-201ENST00000603606 1261 ntBASIC22.64■■□□□ 1.21
COL1A1P02452 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC22.64■■□□□ 1.21
COL1A1P02452 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC22.64■■□□□ 1.21
COL1A1P02452 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
COL1A1P02452 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
COL1A1P02452 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC22.63■■□□□ 1.21
COL1A1P02452 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.63■■□□□ 1.21
COL1A1P02452 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC22.63■■□□□ 1.21
COL1A1P02452 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 MIR564-202ENST00000385049 94 ntBASIC22.63■■□□□ 1.21
COL1A1P02452 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
COL1A1P02452 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
COL1A1P02452 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC22.63■■□□□ 1.21
COL1A1P02452 AC104390.1-201ENST00000555663 520 ntBASIC22.63■■□□□ 1.21
COL1A1P02452 NAT14-202ENST00000587400 416 ntTSL 5 BASIC22.63■■□□□ 1.21
COL1A1P02452 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC22.63■■□□□ 1.21
COL1A1P02452 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms