Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TNFP01375 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TNFP01375 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC18.4■□□□□ 0.54
TNFP01375 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
TNFP01375 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.4■□□□□ 0.54
TNFP01375 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TNFP01375 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.4■□□□□ 0.54
TNFP01375 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
TNFP01375 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TNFP01375 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
TNFP01375 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.4■□□□□ 0.54
TNFP01375 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC18.4■□□□□ 0.54
TNFP01375 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC18.4■□□□□ 0.54
TNFP01375 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC18.39■□□□□ 0.54
TNFP01375 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC18.39■□□□□ 0.54
TNFP01375 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TNFP01375 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
TNFP01375 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.54
TNFP01375 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
TNFP01375 AC008556.1-201ENST00000610908 2040 ntBASIC18.39■□□□□ 0.53
TNFP01375 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.39■□□□□ 0.53
TNFP01375 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 AC083849.1-201ENST00000615227 514 ntBASIC18.39■□□□□ 0.53
TNFP01375 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
TNFP01375 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
TNFP01375 KRT8P32-201ENST00000512863 1461 ntBASIC18.39■□□□□ 0.53
TNFP01375 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TNFP01375 AFG3L1P-217ENST00000557444 2447 ntBASIC18.38■□□□□ 0.53
TNFP01375 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC18.38■□□□□ 0.53
TNFP01375 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.38■□□□□ 0.53
TNFP01375 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC18.38■□□□□ 0.53
TNFP01375 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC18.38■□□□□ 0.53
TNFP01375 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
TNFP01375 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC18.38■□□□□ 0.53
TNFP01375 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC18.38■□□□□ 0.53
TNFP01375 AC116407.4-201ENST00000623319 1061 ntBASIC18.38■□□□□ 0.53
TNFP01375 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
TNFP01375 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.38■□□□□ 0.53
TNFP01375 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
TNFP01375 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
TNFP01375 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC18.38■□□□□ 0.53
TNFP01375 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.38■□□□□ 0.53
TNFP01375 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
TNFP01375 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC18.37■□□□□ 0.53
TNFP01375 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 KRT18P23-201ENST00000435622 1283 ntBASIC18.37■□□□□ 0.53
TNFP01375 SEC1P-202ENST00000473944 940 ntBASIC18.37■□□□□ 0.53
TNFP01375 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC18.37■□□□□ 0.53
TNFP01375 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC18.37■□□□□ 0.53
TNFP01375 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 KRT8P7-201ENST00000533003 1432 ntBASIC18.37■□□□□ 0.53
TNFP01375 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC18.37■□□□□ 0.53
TNFP01375 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.37■□□□□ 0.53
TNFP01375 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC18.37■□□□□ 0.53
TNFP01375 AL032819.2-201ENST00000624543 2162 ntBASIC18.37■□□□□ 0.53
TNFP01375 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
TNFP01375 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
TNFP01375 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC18.36■□□□□ 0.53
TNFP01375 HBZP1-201ENST00000354915 429 ntBASIC18.36■□□□□ 0.53
TNFP01375 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC18.36■□□□□ 0.53
TNFP01375 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
TNFP01375 MIR564-202ENST00000385049 94 ntBASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms