Protein–RNA interactions for Protein: O95398

RAPGEF3, Rap guanine nucleotide exchange factor 3, humanhuman

Predictions only

Length 923 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3O95398 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 AC112482.1-201ENST00000492080 688 ntBASIC28.22■■■□□ 2.11
RAPGEF3O95398 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 AC096582.2-201ENST00000510860 516 ntBASIC28.22■■■□□ 2.11
RAPGEF3O95398 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 AC027601.4-201ENST00000611259 610 ntBASIC28.22■■■□□ 2.11
RAPGEF3O95398 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC28.22■■■□□ 2.11
RAPGEF3O95398 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC28.22■■■□□ 2.11
RAPGEF3O95398 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC28.21■■■□□ 2.11
RAPGEF3O95398 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC28.21■■■□□ 2.11
RAPGEF3O95398 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 HNRNPA1P28-201ENST00000424481 961 ntBASIC28.21■■■□□ 2.11
RAPGEF3O95398 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC28.21■■■□□ 2.11
RAPGEF3O95398 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC28.21■■■□□ 2.11
RAPGEF3O95398 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC28.21■■■□□ 2.11
RAPGEF3O95398 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC28.21■■■□□ 2.11
RAPGEF3O95398 AL391422.3-201ENST00000603791 2761 ntBASIC28.21■■■□□ 2.11
RAPGEF3O95398 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC28.2■■■□□ 2.11
RAPGEF3O95398 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
RAPGEF3O95398 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.11
RAPGEF3O95398 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC28.2■■■□□ 2.11
RAPGEF3O95398 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
RAPGEF3O95398 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC28.2■■■□□ 2.11
RAPGEF3O95398 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 HIST2H3DP1-201ENST00000401004 416 ntBASIC28.2■■■□□ 2.1
RAPGEF3O95398 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 ELP6-205ENST00000439305 880 ntTSL 2 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 CD63-204ENST00000546939 779 ntTSL 3 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
RAPGEF3O95398 MYBL2-202ENST00000396863 2704 ntTSL 2 BASIC28.2■■■□□ 2.1
RAPGEF3O95398 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC28.19■■■□□ 2.1
RAPGEF3O95398 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC28.19■■■□□ 2.1
RAPGEF3O95398 DHDH-204ENST00000523250 634 ntTSL 5 BASIC28.19■■■□□ 2.1
RAPGEF3O95398 FAM197Y3-203ENST00000618346 717 ntBASIC28.19■■■□□ 2.1
RAPGEF3O95398 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 STK25-234ENST00000535007 2459 ntTSL 2 BASIC28.19■■■□□ 2.1
RAPGEF3O95398 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC28.19■■■□□ 2.1
RAPGEF3O95398 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RAPGEF3O95398 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RAPGEF3O95398 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
RAPGEF3O95398 YBX2P1-201ENST00000394192 760 ntBASIC28.18■■■□□ 2.1
RAPGEF3O95398 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RAPGEF3O95398 LBH-204ENST00000406087 559 ntTSL 4 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 IMP4-203ENST00000409935 958 ntTSL 5 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 MED15P5-201ENST00000423150 992 ntBASIC28.18■■■□□ 2.1
RAPGEF3O95398 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RAPGEF3O95398 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 AC034105.1-201ENST00000563488 319 ntBASIC28.18■■■□□ 2.1
RAPGEF3O95398 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
RAPGEF3O95398 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC28.18■■■□□ 2.1
RAPGEF3O95398 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC28.17■■■□□ 2.1
RAPGEF3O95398 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
RAPGEF3O95398 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC28.17■■■□□ 2.1
RAPGEF3O95398 PAM16-208ENST00000573553 722 ntTSL 2 BASIC28.17■■■□□ 2.1
RAPGEF3O95398 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC28.17■■■□□ 2.1
RAPGEF3O95398 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC28.17■■■□□ 2.1
RAPGEF3O95398 AL512408.1-201ENST00000569378 2000 ntBASIC28.17■■■□□ 2.1
RAPGEF3O95398 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC28.17■■■□□ 2.1
RAPGEF3O95398 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC28.17■■■□□ 2.1
RAPGEF3O95398 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC28.16■■■□□ 2.1
RAPGEF3O95398 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
RAPGEF3O95398 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC28.16■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms