Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC17.06■□□□□ 0.32
SSX4O60224 CABP2-204ENST00000636477 941 ntTSL 5 BASIC17.06■□□□□ 0.32
SSX4O60224 AL049637.2-201ENST00000641778 930 ntBASIC17.06■□□□□ 0.32
SSX4O60224 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SSX4O60224 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.06■□□□□ 0.32
SSX4O60224 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SSX4O60224 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC17.06■□□□□ 0.32
SSX4O60224 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC17.06■□□□□ 0.32
SSX4O60224 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SSX4O60224 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SSX4O60224 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.05■□□□□ 0.32
SSX4O60224 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC17.05■□□□□ 0.32
SSX4O60224 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC17.05■□□□□ 0.32
SSX4O60224 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC17.05■□□□□ 0.32
SSX4O60224 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC17.05■□□□□ 0.32
SSX4O60224 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 PXK-206ENST00000463280 2825 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.05■□□□□ 0.32
SSX4O60224 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SSX4O60224 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.04■□□□□ 0.32
SSX4O60224 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.04■□□□□ 0.32
SSX4O60224 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX4O60224 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX4O60224 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC17.04■□□□□ 0.32
SSX4O60224 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX4O60224 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC17.04■□□□□ 0.32
SSX4O60224 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX4O60224 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX4O60224 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
SSX4O60224 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
SSX4O60224 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.04■□□□□ 0.32
SSX4O60224 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.04■□□□□ 0.32
SSX4O60224 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 CD37-204ENST00000535669 1674 ntTSL 2 BASIC17.04■□□□□ 0.32
SSX4O60224 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
SSX4O60224 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SSX4O60224 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC17.03■□□□□ 0.32
SSX4O60224 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC17.03■□□□□ 0.32
SSX4O60224 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
SSX4O60224 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC17.03■□□□□ 0.32
SSX4O60224 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 BX088651.1-201ENST00000540551 451 ntBASIC17.03■□□□□ 0.32
SSX4O60224 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
SSX4O60224 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
SSX4O60224 LINC01023-201ENST00000606054 436 ntBASIC17.03■□□□□ 0.32
SSX4O60224 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
SSX4O60224 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.03■□□□□ 0.32
SSX4O60224 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC17.03■□□□□ 0.32
SSX4O60224 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms