Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 TEX21P-204ENST00000641479 1693 ntBASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC15.34■□□□□ 0.05
TRAV40A0A0B4J280 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
TRAV40A0A0B4J280 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC15.33■□□□□ 0.05
TRAV40A0A0B4J280 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC15.33■□□□□ 0.05
TRAV40A0A0B4J280 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 BID-204ENST00000399767 2129 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 SPDYE15P-201ENST00000424157 909 ntBASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 AP000550.4-202ENST00000639755 178 ntBASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 KRT8P3-201ENST00000519669 1449 ntBASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC15.33■□□□□ 0.04
TRAV40A0A0B4J280 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 AFG3L1P-217ENST00000557444 2447 ntBASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 STARP1-201ENST00000397973 869 ntBASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 PCED1CP-201ENST00000419887 785 ntBASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 DAP-202ENST00000432074 1048 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 IER3-202ENST00000376377 1350 ntBASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 KATNBL1P6-202ENST00000562413 1466 ntBASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
TRAV40A0A0B4J280 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
TRAV40A0A0B4J280 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms