Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 RN7SL471P-201ENST00000580476 299 ntBASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 AC110285.5-201ENST00000611501 352 ntBASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 AC131212.4-201ENST00000623606 975 ntBASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 KRT8P32-201ENST00000512863 1461 ntBASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
PCDHA3Q9Y5H8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
PCDHA3Q9Y5H8 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 ESRRAP1-201ENST00000400596 1257 ntBASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 NIFKP9-201ENST00000419265 221 ntBASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 PRSS44-201ENST00000515154 1146 ntBASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 KRT18P6-201ENST00000555540 1265 ntBASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 NARFL-201ENST00000251588 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PCDHA3Q9Y5H8 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 KRT8P3-201ENST00000519669 1449 ntBASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 NOC2LP2-201ENST00000407594 1944 ntBASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC19.69■□□□□ 0.74
PCDHA3Q9Y5H8 AL499627.1-201ENST00000569373 2188 ntBASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PCDHA3Q9Y5H8 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms