Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
FOXA2Q9Y261 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 MME-217ENST00000616757 1315 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 AL160286.2-201ENST00000567150 934 ntBASIC15.25■□□□□ 0.03
FOXA2Q9Y261 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 TRIM63-201ENST00000374272 1770 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 EFTUD1P1-204ENST00000560401 1798 ntBASIC15.25■□□□□ 0.03
FOXA2Q9Y261 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 AL390961.4-201ENST00000623958 2535 ntBASIC15.25■□□□□ 0.03
FOXA2Q9Y261 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 GAS2L1P1-201ENST00000420145 1480 ntBASIC15.25■□□□□ 0.03
FOXA2Q9Y261 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC15.25■□□□□ 0.03
FOXA2Q9Y261 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 NF2-203ENST00000353887 1845 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 GOLGA6L5P-202ENST00000515341 1828 ntBASIC15.24■□□□□ 0.03
FOXA2Q9Y261 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 ARHGAP22-203ENST00000374172 2380 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 MIR718-201ENST00000390190 70 ntBASIC15.24■□□□□ 0.03
FOXA2Q9Y261 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC15.24■□□□□ 0.03
FOXA2Q9Y261 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms