Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.14■□□□□ 0.33
USP43Q70EL4 AC068338.2-201ENST00000563278 1430 ntBASIC17.14■□□□□ 0.33
USP43Q70EL4 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC17.14■□□□□ 0.33
USP43Q70EL4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.14■□□□□ 0.33
USP43Q70EL4 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.14■□□□□ 0.33
USP43Q70EL4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
USP43Q70EL4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC17.14■□□□□ 0.33
USP43Q70EL4 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 KRT18P29-201ENST00000397031 1267 ntBASIC17.14■□□□□ 0.33
USP43Q70EL4 MIPEPP3-201ENST00000412105 444 ntBASIC17.14■□□□□ 0.33
USP43Q70EL4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
USP43Q70EL4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.14■□□□□ 0.33
USP43Q70EL4 AC243732.1-201ENST00000612648 864 ntBASIC17.14■□□□□ 0.33
USP43Q70EL4 AC092118.2-201ENST00000613495 667 ntBASIC17.14■□□□□ 0.33
USP43Q70EL4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC17.14■□□□□ 0.33
USP43Q70EL4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC17.14■□□□□ 0.33
USP43Q70EL4 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
USP43Q70EL4 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC17.14■□□□□ 0.33
USP43Q70EL4 SIGIRR-202ENST00000397632 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 ARRB1-201ENST00000360025 1895 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC17.14■□□□□ 0.33
USP43Q70EL4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
USP43Q70EL4 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
USP43Q70EL4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 ESPNP-201ENST00000270691 2015 ntBASIC17.13■□□□□ 0.33
USP43Q70EL4 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC17.13■□□□□ 0.33
USP43Q70EL4 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC17.13■□□□□ 0.33
USP43Q70EL4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.13■□□□□ 0.33
USP43Q70EL4 CYP2T1P-201ENST00000432607 1285 ntBASIC17.13■□□□□ 0.33
USP43Q70EL4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 AC093827.2-201ENST00000512654 315 ntBASIC17.13■□□□□ 0.33
USP43Q70EL4 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC17.13■□□□□ 0.33
USP43Q70EL4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC17.13■□□□□ 0.33
USP43Q70EL4 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC17.13■□□□□ 0.33
USP43Q70EL4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 AC069236.1-201ENST00000604339 616 ntBASIC17.13■□□□□ 0.33
USP43Q70EL4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC17.13■□□□□ 0.33
USP43Q70EL4 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC17.13■□□□□ 0.33
USP43Q70EL4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
USP43Q70EL4 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.13■□□□□ 0.33
USP43Q70EL4 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 SIRPAP1-201ENST00000448467 1770 ntBASIC17.12■□□□□ 0.33
USP43Q70EL4 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.12■□□□□ 0.33
USP43Q70EL4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
USP43Q70EL4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.12■□□□□ 0.33
USP43Q70EL4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
USP43Q70EL4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC17.12■□□□□ 0.33
USP43Q70EL4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms