Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.15■□□□□ 0.66
USP39Q53GS9 ATP5G2P1-201ENST00000433580 426 ntBASIC19.15■□□□□ 0.66
USP39Q53GS9 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.15■□□□□ 0.66
USP39Q53GS9 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC19.15■□□□□ 0.66
USP39Q53GS9 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC19.15■□□□□ 0.66
USP39Q53GS9 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.15■□□□□ 0.66
USP39Q53GS9 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC19.15■□□□□ 0.66
USP39Q53GS9 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC19.15■□□□□ 0.66
USP39Q53GS9 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
USP39Q53GS9 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
USP39Q53GS9 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
USP39Q53GS9 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
USP39Q53GS9 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
USP39Q53GS9 AC116562.4-201ENST00000641316 2276 ntBASIC19.14■□□□□ 0.66
USP39Q53GS9 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
USP39Q53GS9 TMEM255B-202ENST00000375353 6100 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
USP39Q53GS9 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 BUB3-202ENST00000368859 667 ntTSL 3 BASIC19.14■□□□□ 0.65
USP39Q53GS9 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC19.14■□□□□ 0.65
USP39Q53GS9 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.14■□□□□ 0.65
USP39Q53GS9 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC19.14■□□□□ 0.65
USP39Q53GS9 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC19.14■□□□□ 0.65
USP39Q53GS9 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.14■□□□□ 0.65
USP39Q53GS9 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC19.14■□□□□ 0.65
USP39Q53GS9 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC19.14■□□□□ 0.65
USP39Q53GS9 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC19.14■□□□□ 0.65
USP39Q53GS9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
USP39Q53GS9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC19.13■□□□□ 0.65
USP39Q53GS9 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USP39Q53GS9 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
USP39Q53GS9 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
USP39Q53GS9 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC19.13■□□□□ 0.65
USP39Q53GS9 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.13■□□□□ 0.65
USP39Q53GS9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC19.13■□□□□ 0.65
USP39Q53GS9 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
USP39Q53GS9 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.13■□□□□ 0.65
USP39Q53GS9 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC19.13■□□□□ 0.65
USP39Q53GS9 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
USP39Q53GS9 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.12■□□□□ 0.65
USP39Q53GS9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
USP39Q53GS9 ANKRD18DP-204ENST00000455355 1975 ntBASIC19.12■□□□□ 0.65
USP39Q53GS9 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
USP39Q53GS9 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC19.12■□□□□ 0.65
USP39Q53GS9 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC19.12■□□□□ 0.65
USP39Q53GS9 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC19.12■□□□□ 0.65
USP39Q53GS9 DMKN-208ENST00000424570 1293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC19.12■□□□□ 0.65
USP39Q53GS9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
USP39Q53GS9 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
USP39Q53GS9 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
USP39Q53GS9 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP39Q53GS9 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP39Q53GS9 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC19.11■□□□□ 0.65
USP39Q53GS9 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP39Q53GS9 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
USP39Q53GS9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
USP39Q53GS9 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC19.11■□□□□ 0.65
USP39Q53GS9 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.11■□□□□ 0.65
USP39Q53GS9 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
USP39Q53GS9 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
USP39Q53GS9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms