Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 POLD2P1-201ENST00000511220 997 ntBASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 ABR-217ENST00000572441 563 ntTSL 4 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 MIR7706-201ENST00000613747 67 ntBASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 VPS51-217ENST00000639871 243 ntTSL 5 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 AC243591.1-201ENST00000452967 1364 ntBASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
CCDC88AQ3V6T2 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 MIR3180-5-201ENST00000583743 153 ntBASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC23.06■■□□□ 1.28
CCDC88AQ3V6T2 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 MIR1233-2-201ENST00000408138 82 ntBASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 MIR1233-1-201ENST00000408722 82 ntBASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC23.05■■□□□ 1.28
CCDC88AQ3V6T2 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 LITAF-220ENST00000620789 692 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 GAS2L1P1-201ENST00000420145 1480 ntBASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC88AQ3V6T2 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC88AQ3V6T2 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC23.02■■□□□ 1.28
CCDC88AQ3V6T2 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms