Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
PEX3P56589 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC20.77■□□□□ 0.92
PEX3P56589 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.77■□□□□ 0.92
PEX3P56589 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
PEX3P56589 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.77■□□□□ 0.91
PEX3P56589 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.77■□□□□ 0.91
PEX3P56589 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
PEX3P56589 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.91
PEX3P56589 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC20.76■□□□□ 0.91
PEX3P56589 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC20.76■□□□□ 0.91
PEX3P56589 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
PEX3P56589 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.76■□□□□ 0.91
PEX3P56589 RCN1P1-201ENST00000400413 996 ntBASIC20.76■□□□□ 0.91
PEX3P56589 LIN28AP1-201ENST00000429574 405 ntBASIC20.76■□□□□ 0.91
PEX3P56589 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.76■□□□□ 0.91
PEX3P56589 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.76■□□□□ 0.91
PEX3P56589 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
PEX3P56589 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
PEX3P56589 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC20.75■□□□□ 0.91
PEX3P56589 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
PEX3P56589 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC20.75■□□□□ 0.91
PEX3P56589 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.75■□□□□ 0.91
PEX3P56589 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC20.75■□□□□ 0.91
PEX3P56589 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.75■□□□□ 0.91
PEX3P56589 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC20.75■□□□□ 0.91
PEX3P56589 KRT18P57-201ENST00000443599 1254 ntBASIC20.75■□□□□ 0.91
PEX3P56589 MCCD1P1-208ENST00000445732 328 ntBASIC20.75■□□□□ 0.91
PEX3P56589 ATP5G1P1-201ENST00000448724 379 ntBASIC20.75■□□□□ 0.91
PEX3P56589 KRT18P21-201ENST00000515767 1272 ntBASIC20.75■□□□□ 0.91
PEX3P56589 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.75■□□□□ 0.91
PEX3P56589 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
PEX3P56589 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC20.75■□□□□ 0.91
PEX3P56589 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC20.75■□□□□ 0.91
PEX3P56589 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC20.75■□□□□ 0.91
PEX3P56589 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC20.75■□□□□ 0.91
PEX3P56589 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC20.75■□□□□ 0.91
PEX3P56589 MFSD10-202ENST00000355443 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PEX3P56589 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
PEX3P56589 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC20.74■□□□□ 0.91
PEX3P56589 PHB2-202ENST00000440277 996 ntTSL 5 BASIC20.74■□□□□ 0.91
PEX3P56589 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
PEX3P56589 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
PEX3P56589 AC073508.3-201ENST00000619697 1419 ntBASIC20.74■□□□□ 0.91
PEX3P56589 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 AC006333.2-201ENST00000607957 2099 ntBASIC20.74■□□□□ 0.91
PEX3P56589 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.74■□□□□ 0.91
PEX3P56589 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
PEX3P56589 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC20.74■□□□□ 0.91
PEX3P56589 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC20.74■□□□□ 0.91
PEX3P56589 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
PEX3P56589 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.73■□□□□ 0.91
PEX3P56589 AC008556.1-201ENST00000610908 2040 ntBASIC20.73■□□□□ 0.91
PEX3P56589 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 PSRC1-202ENST00000369904 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
PEX3P56589 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.73■□□□□ 0.91
PEX3P56589 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.73■□□□□ 0.91
PEX3P56589 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.73■□□□□ 0.91
PEX3P56589 AL138966.2-201ENST00000621997 464 ntBASIC20.73■□□□□ 0.91
PEX3P56589 CR769767.2-201ENST00000622735 460 ntBASIC20.73■□□□□ 0.91
PEX3P56589 AC068587.9-201ENST00000641814 219 ntBASIC20.73■□□□□ 0.91
PEX3P56589 ACTG1-201ENST00000331925 1994 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
PEX3P56589 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 AP000974.1-201ENST00000623909 2387 ntBASIC20.73■□□□□ 0.91
PEX3P56589 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
PEX3P56589 PPFIA1-201ENST00000253925 5234 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms