Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
SUMO3P55854 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC17.08■□□□□ 0.33
SUMO3P55854 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC17.08■□□□□ 0.33
SUMO3P55854 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC17.08■□□□□ 0.33
SUMO3P55854 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC17.08■□□□□ 0.32
SUMO3P55854 GPAT2P1-201ENST00000444924 1672 ntBASIC17.08■□□□□ 0.32
SUMO3P55854 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC17.08■□□□□ 0.32
SUMO3P55854 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 KRT8P9-201ENST00000558927 1449 ntBASIC17.08■□□□□ 0.32
SUMO3P55854 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 CRAT-202ENST00000393384 973 ntTSL 2 BASIC17.08■□□□□ 0.32
SUMO3P55854 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
SUMO3P55854 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.08■□□□□ 0.32
SUMO3P55854 AC007663.1-201ENST00000438948 1240 ntBASIC17.08■□□□□ 0.32
SUMO3P55854 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.08■□□□□ 0.32
SUMO3P55854 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.08■□□□□ 0.32
SUMO3P55854 GXYLT1P6-201ENST00000456472 1187 ntBASIC17.08■□□□□ 0.32
SUMO3P55854 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
SUMO3P55854 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.08■□□□□ 0.32
SUMO3P55854 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.08■□□□□ 0.32
SUMO3P55854 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
SUMO3P55854 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.08■□□□□ 0.32
SUMO3P55854 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
SUMO3P55854 CROCCP3-202ENST00000420820 1947 ntBASIC17.08■□□□□ 0.32
SUMO3P55854 ARSA-203ENST00000395619 1824 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SUMO3P55854 HEXDC-203ENST00000577944 1820 ntTSL 5 BASIC17.07■□□□□ 0.32
SUMO3P55854 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SUMO3P55854 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.07■□□□□ 0.32
SUMO3P55854 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC17.07■□□□□ 0.32
SUMO3P55854 CYP2D8P-201ENST00000433633 1490 ntBASIC17.07■□□□□ 0.32
SUMO3P55854 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
SUMO3P55854 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SUMO3P55854 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC17.07■□□□□ 0.32
SUMO3P55854 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SUMO3P55854 AP003041.3-201ENST00000527151 707 ntBASIC17.07■□□□□ 0.32
SUMO3P55854 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC17.07■□□□□ 0.32
SUMO3P55854 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC17.07■□□□□ 0.32
SUMO3P55854 AC073912.3-201ENST00000624414 853 ntBASIC17.07■□□□□ 0.32
SUMO3P55854 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC17.07■□□□□ 0.32
SUMO3P55854 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 AL031598.1-201ENST00000561511 1773 ntBASIC17.07■□□□□ 0.32
SUMO3P55854 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SUMO3P55854 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 MTMR9LP-203ENST00000426597 1545 ntBASIC17.06■□□□□ 0.32
SUMO3P55854 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.06■□□□□ 0.32
SUMO3P55854 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
SUMO3P55854 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 AC087499.1-201ENST00000418141 1075 ntBASIC17.06■□□□□ 0.32
SUMO3P55854 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.06■□□□□ 0.32
SUMO3P55854 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC17.06■□□□□ 0.32
SUMO3P55854 AL512604.3-201ENST00000569583 964 ntBASIC17.06■□□□□ 0.32
SUMO3P55854 MIR3180-5-201ENST00000583743 153 ntBASIC17.06■□□□□ 0.32
SUMO3P55854 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
SUMO3P55854 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SUMO3P55854 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
SUMO3P55854 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.05■□□□□ 0.32
SUMO3P55854 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC17.05■□□□□ 0.32
SUMO3P55854 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.05■□□□□ 0.32
SUMO3P55854 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC17.05■□□□□ 0.32
SUMO3P55854 WWOX-216ENST00000569818 525 ntBASIC17.05■□□□□ 0.32
SUMO3P55854 MIR4674-201ENST00000582457 87 ntBASIC17.05■□□□□ 0.32
SUMO3P55854 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
SUMO3P55854 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SUMO3P55854 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
SUMO3P55854 MYC-208ENST00000641036 567 ntBASIC17.05■□□□□ 0.32
SUMO3P55854 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 COBL-210ENST00000632460 1941 ntTSL 5 BASIC17.05■□□□□ 0.32
SUMO3P55854 INTS11-249ENST00000618806 1523 ntTSL 2 BASIC17.05■□□□□ 0.32
SUMO3P55854 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SUMO3P55854 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms