Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
HNF4AP41235 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC18.3■□□□□ 0.52
HNF4AP41235 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC18.3■□□□□ 0.52
HNF4AP41235 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HNF4AP41235 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 AC083906.6-201ENST00000641366 219 ntBASIC18.3■□□□□ 0.52
HNF4AP41235 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HNF4AP41235 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HNF4AP41235 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC18.29■□□□□ 0.52
HNF4AP41235 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 FAM131A-204ENST00000418281 1664 ntTSL 5 BASIC18.29■□□□□ 0.52
HNF4AP41235 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.29■□□□□ 0.52
HNF4AP41235 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HNF4AP41235 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
HNF4AP41235 AL355355.2-201ENST00000442321 338 ntBASIC18.29■□□□□ 0.52
HNF4AP41235 AC091390.4-202ENST00000476426 537 ntBASIC18.29■□□□□ 0.52
HNF4AP41235 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC18.29■□□□□ 0.52
HNF4AP41235 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.29■□□□□ 0.52
HNF4AP41235 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
HNF4AP41235 LRRC23-201ENST00000007969 1615 ntAPPRIS P4 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HNF4AP41235 Z98044.1-201ENST00000632503 1764 ntBASIC18.29■□□□□ 0.52
HNF4AP41235 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC18.29■□□□□ 0.52
HNF4AP41235 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.29■□□□□ 0.52
HNF4AP41235 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC18.29■□□□□ 0.52
HNF4AP41235 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC18.29■□□□□ 0.52
HNF4AP41235 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HNF4AP41235 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 AL031598.1-201ENST00000561511 1773 ntBASIC18.28■□□□□ 0.52
HNF4AP41235 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
HNF4AP41235 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.28■□□□□ 0.52
HNF4AP41235 AC011506.1-201ENST00000474329 610 ntBASIC18.28■□□□□ 0.52
HNF4AP41235 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC18.28■□□□□ 0.52
HNF4AP41235 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 AC011298.2-201ENST00000617989 482 ntBASIC18.28■□□□□ 0.52
HNF4AP41235 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 LETM1P2-201ENST00000597330 2178 ntBASIC18.28■□□□□ 0.52
HNF4AP41235 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC18.28■□□□□ 0.52
HNF4AP41235 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.28■□□□□ 0.52
HNF4AP41235 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
HNF4AP41235 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
HNF4AP41235 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.27■□□□□ 0.52
HNF4AP41235 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC18.27■□□□□ 0.52
HNF4AP41235 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
HNF4AP41235 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.27■□□□□ 0.52
HNF4AP41235 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.27■□□□□ 0.52
HNF4AP41235 AC026471.5-201ENST00000615068 467 ntBASIC18.27■□□□□ 0.52
HNF4AP41235 MIR6786-201ENST00000616843 113 ntBASIC18.27■□□□□ 0.52
HNF4AP41235 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.27■□□□□ 0.52
HNF4AP41235 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
HNF4AP41235 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 P2RX5-203ENST00000547178 1998 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
HNF4AP41235 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC18.27■□□□□ 0.51
HNF4AP41235 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
HNF4AP41235 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
HNF4AP41235 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.27■□□□□ 0.51
HNF4AP41235 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms