Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SMARCA1P28370 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC21.65■■□□□ 1.06
SMARCA1P28370 AC093525.10-201ENST00000625130 1569 ntBASIC21.65■■□□□ 1.06
SMARCA1P28370 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SMARCA1P28370 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMARCA1P28370 GMDS-208ENST00000530927 1440 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMARCA1P28370 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMARCA1P28370 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMARCA1P28370 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMARCA1P28370 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC21.64■■□□□ 1.06
SMARCA1P28370 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
SMARCA1P28370 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC21.64■■□□□ 1.05
SMARCA1P28370 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC21.64■■□□□ 1.05
SMARCA1P28370 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC21.64■■□□□ 1.05
SMARCA1P28370 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SMARCA1P28370 TSPAN14-202ENST00000341863 1037 ntTSL 5 BASIC21.64■■□□□ 1.05
SMARCA1P28370 Telomerase-vert.1-201ENST00000363312 438 ntBASIC21.64■■□□□ 1.05
SMARCA1P28370 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
SMARCA1P28370 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.64■■□□□ 1.05
SMARCA1P28370 AC117947.1-201ENST00000427448 529 ntBASIC21.64■■□□□ 1.05
SMARCA1P28370 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 AC034236.2-201ENST00000606662 1610 ntBASIC21.64■■□□□ 1.05
SMARCA1P28370 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.64■■□□□ 1.05
SMARCA1P28370 SMPD1-203ENST00000527275 2188 ntAPPRIS P3 TSL 2 BASIC21.64■■□□□ 1.05
SMARCA1P28370 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 AL357033.4-201ENST00000617703 1807 ntBASIC21.64■■□□□ 1.05
SMARCA1P28370 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SMARCA1P28370 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC21.63■■□□□ 1.05
SMARCA1P28370 GAD2-202ENST00000376248 680 ntTSL 5 BASIC21.63■■□□□ 1.05
SMARCA1P28370 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 YBX1P2-201ENST00000489612 999 ntBASIC21.63■■□□□ 1.05
SMARCA1P28370 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.63■■□□□ 1.05
SMARCA1P28370 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC21.63■■□□□ 1.05
SMARCA1P28370 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC21.63■■□□□ 1.05
SMARCA1P28370 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SMARCA1P28370 ARAP1-AS2-201ENST00000500163 1824 ntTSL 2 BASIC21.63■■□□□ 1.05
SMARCA1P28370 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SMARCA1P28370 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC21.63■■□□□ 1.05
SMARCA1P28370 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.63■■□□□ 1.05
SMARCA1P28370 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCA1P28370 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.62■■□□□ 1.05
SMARCA1P28370 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.62■■□□□ 1.05
SMARCA1P28370 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC21.62■■□□□ 1.05
SMARCA1P28370 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCA1P28370 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC21.62■■□□□ 1.05
SMARCA1P28370 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.62■■□□□ 1.05
SMARCA1P28370 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC21.62■■□□□ 1.05
SMARCA1P28370 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.62■■□□□ 1.05
SMARCA1P28370 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC21.62■■□□□ 1.05
SMARCA1P28370 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC21.62■■□□□ 1.05
SMARCA1P28370 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 AC139887.4-201ENST00000607877 719 ntBASIC21.62■■□□□ 1.05
SMARCA1P28370 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCA1P28370 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
SMARCA1P28370 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC21.62■■□□□ 1.05
SMARCA1P28370 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
SMARCA1P28370 Z98044.1-201ENST00000632503 1764 ntBASIC21.61■■□□□ 1.05
SMARCA1P28370 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC21.61■■□□□ 1.05
SMARCA1P28370 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 EEF1AKMT2-201ENST00000368836 1462 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
SMARCA1P28370 RNF152P1-201ENST00000397754 604 ntBASIC21.61■■□□□ 1.05
SMARCA1P28370 GRAMD4P1-201ENST00000435181 1110 ntBASIC21.61■■□□□ 1.05
SMARCA1P28370 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC21.61■■□□□ 1.05
SMARCA1P28370 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC21.61■■□□□ 1.05
SMARCA1P28370 AC140113.3-201ENST00000605663 199 ntBASIC21.61■■□□□ 1.05
SMARCA1P28370 AC011558.1-201ENST00000623459 338 ntBASIC21.61■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms