Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC24.94■■□□□ 1.58
COL3A1P02461 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC24.94■■□□□ 1.58
COL3A1P02461 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
COL3A1P02461 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC24.94■■□□□ 1.58
COL3A1P02461 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL3A1P02461 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
COL3A1P02461 KRT8P50-201ENST00000562022 1438 ntBASIC24.94■■□□□ 1.58
COL3A1P02461 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC24.93■■□□□ 1.58
COL3A1P02461 SNAI3-AS1-205ENST00000568633 2096 ntBASIC24.93■■□□□ 1.58
COL3A1P02461 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 HBZP1-201ENST00000354915 429 ntBASIC24.93■■□□□ 1.58
COL3A1P02461 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC24.93■■□□□ 1.58
COL3A1P02461 LINC01238-205ENST00000567549 1107 ntBASIC24.93■■□□□ 1.58
COL3A1P02461 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC24.93■■□□□ 1.58
COL3A1P02461 WDR6-223ENST00000627177 207 ntTSL 2 BASIC24.93■■□□□ 1.58
COL3A1P02461 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC24.93■■□□□ 1.58
COL3A1P02461 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC24.93■■□□□ 1.58
COL3A1P02461 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC24.93■■□□□ 1.58
COL3A1P02461 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC24.93■■□□□ 1.58
COL3A1P02461 SLC2A14-214ENST00000542505 1650 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC24.92■■□□□ 1.58
COL3A1P02461 AL357033.4-201ENST00000617703 1807 ntBASIC24.92■■□□□ 1.58
COL3A1P02461 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 KRT18P23-201ENST00000435622 1283 ntBASIC24.92■■□□□ 1.58
COL3A1P02461 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC24.92■■□□□ 1.58
COL3A1P02461 AC104390.1-201ENST00000555663 520 ntBASIC24.92■■□□□ 1.58
COL3A1P02461 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC24.92■■□□□ 1.58
COL3A1P02461 TPM1-226ENST00000560959 925 ntTSL 2 BASIC24.92■■□□□ 1.58
COL3A1P02461 MIR3917-201ENST00000580971 93 ntBASIC24.92■■□□□ 1.58
COL3A1P02461 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC24.92■■□□□ 1.58
COL3A1P02461 AC010240.3-201ENST00000607688 395 ntBASIC24.92■■□□□ 1.58
COL3A1P02461 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC24.92■■□□□ 1.58
COL3A1P02461 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC24.92■■□□□ 1.58
COL3A1P02461 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC24.92■■□□□ 1.58
COL3A1P02461 PLA2G7-201ENST00000274793 1882 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
COL3A1P02461 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC24.91■■□□□ 1.58
COL3A1P02461 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC24.91■■□□□ 1.58
COL3A1P02461 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC24.91■■□□□ 1.58
COL3A1P02461 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC24.91■■□□□ 1.58
COL3A1P02461 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC24.91■■□□□ 1.58
COL3A1P02461 AL121956.5-201ENST00000625261 221 ntBASIC24.91■■□□□ 1.58
COL3A1P02461 AC034236.2-201ENST00000606662 1610 ntBASIC24.91■■□□□ 1.58
COL3A1P02461 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC24.91■■□□□ 1.58
COL3A1P02461 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
COL3A1P02461 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC24.91■■□□□ 1.58
COL3A1P02461 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
COL3A1P02461 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC24.91■■□□□ 1.58
COL3A1P02461 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC24.91■■□□□ 1.58
COL3A1P02461 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC24.9■■□□□ 1.58
COL3A1P02461 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC24.9■■□□□ 1.58
COL3A1P02461 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC24.9■■□□□ 1.58
COL3A1P02461 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC24.9■■□□□ 1.58
COL3A1P02461 AC005332.1-201ENST00000577698 1310 ntBASIC24.9■■□□□ 1.58
COL3A1P02461 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL3A1P02461 AC092597.1-201ENST00000487352 616 ntBASIC24.9■■□□□ 1.58
COL3A1P02461 FAM86EP-206ENST00000510506 987 ntBASIC24.9■■□□□ 1.58
COL3A1P02461 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC24.9■■□□□ 1.58
COL3A1P02461 AC087388.1-201ENST00000571370 1112 ntBASIC24.9■■□□□ 1.58
COL3A1P02461 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL3A1P02461 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL3A1P02461 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC24.9■■□□□ 1.58
COL3A1P02461 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
COL3A1P02461 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
COL3A1P02461 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL3A1P02461 GAD2-202ENST00000376248 680 ntTSL 5 BASIC24.89■■□□□ 1.58
COL3A1P02461 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC24.89■■□□□ 1.58
COL3A1P02461 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC24.89■■□□□ 1.58
COL3A1P02461 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
COL3A1P02461 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC24.89■■□□□ 1.58
COL3A1P02461 RMI2-205ENST00000576027 818 ntTSL 2 BASIC24.89■■□□□ 1.58
COL3A1P02461 NT5C-211ENST00000582170 653 ntTSL 3 BASIC24.89■■□□□ 1.58
COL3A1P02461 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.58
COL3A1P02461 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC24.89■■□□□ 1.58
COL3A1P02461 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC24.89■■□□□ 1.58
COL3A1P02461 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms