Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC22.73■■□□□ 1.23
COL1A1P02452 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC22.72■■□□□ 1.23
COL1A1P02452 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC22.72■■□□□ 1.23
COL1A1P02452 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 ADM-207ENST00000530439 1839 ntTSL 2 BASIC22.72■■□□□ 1.23
COL1A1P02452 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC22.72■■□□□ 1.23
COL1A1P02452 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC22.72■■□□□ 1.23
COL1A1P02452 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC22.72■■□□□ 1.23
COL1A1P02452 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC22.72■■□□□ 1.23
COL1A1P02452 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC22.72■■□□□ 1.23
COL1A1P02452 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
COL1A1P02452 PRR29-207ENST00000580752 458 ntTSL 3 BASIC22.72■■□□□ 1.23
COL1A1P02452 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.71■■□□□ 1.23
COL1A1P02452 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC22.71■■□□□ 1.23
COL1A1P02452 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
COL1A1P02452 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 AC034232.1-201ENST00000506026 1064 ntBASIC22.71■■□□□ 1.23
COL1A1P02452 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC22.71■■□□□ 1.23
COL1A1P02452 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
COL1A1P02452 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC22.71■■□□□ 1.23
COL1A1P02452 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC22.71■■□□□ 1.23
COL1A1P02452 IRF5-214ENST00000613821 595 ntTSL 5 BASIC22.71■■□□□ 1.23
COL1A1P02452 AC112497.1-201ENST00000624824 639 ntBASIC22.71■■□□□ 1.23
COL1A1P02452 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC22.71■■□□□ 1.23
COL1A1P02452 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
COL1A1P02452 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL1A1P02452 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL1A1P02452 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC22.7■■□□□ 1.22
COL1A1P02452 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC22.7■■□□□ 1.22
COL1A1P02452 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL1A1P02452 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC22.7■■□□□ 1.22
COL1A1P02452 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
COL1A1P02452 AC068587.9-201ENST00000641814 219 ntBASIC22.7■■□□□ 1.22
COL1A1P02452 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
COL1A1P02452 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC22.7■■□□□ 1.22
COL1A1P02452 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC22.69■■□□□ 1.22
COL1A1P02452 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL1A1P02452 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
COL1A1P02452 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL1A1P02452 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL1A1P02452 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC22.69■■□□□ 1.22
COL1A1P02452 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC22.69■■□□□ 1.22
COL1A1P02452 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
COL1A1P02452 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC22.69■■□□□ 1.22
COL1A1P02452 MIR3917-201ENST00000580971 93 ntBASIC22.69■■□□□ 1.22
COL1A1P02452 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC22.69■■□□□ 1.22
COL1A1P02452 EGFR-202ENST00000342916 2239 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL1A1P02452 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.69■■□□□ 1.22
COL1A1P02452 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
COL1A1P02452 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC22.68■■□□□ 1.22
COL1A1P02452 HOXB1-202ENST00000577092 1414 ntBASIC22.68■■□□□ 1.22
COL1A1P02452 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC22.68■■□□□ 1.22
COL1A1P02452 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC22.68■■□□□ 1.22
COL1A1P02452 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC22.68■■□□□ 1.22
COL1A1P02452 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC22.68■■□□□ 1.22
COL1A1P02452 PRELID1P1-202ENST00000567272 903 ntBASIC22.68■■□□□ 1.22
COL1A1P02452 AC111152.3-201ENST00000569699 673 ntBASIC22.68■■□□□ 1.22
COL1A1P02452 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC22.68■■□□□ 1.22
COL1A1P02452 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC22.68■■□□□ 1.22
COL1A1P02452 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC22.68■■□□□ 1.22
COL1A1P02452 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
COL1A1P02452 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 AL049812.1-201ENST00000432563 2267 ntBASIC22.68■■□□□ 1.22
COL1A1P02452 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
COL1A1P02452 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC22.67■■□□□ 1.22
COL1A1P02452 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC22.67■■□□□ 1.22
COL1A1P02452 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC22.67■■□□□ 1.22
COL1A1P02452 HLA-F-220ENST00000434407 884 ntBASIC22.67■■□□□ 1.22
COL1A1P02452 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
COL1A1P02452 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC22.67■■□□□ 1.22
COL1A1P02452 AC092119.3-201ENST00000612618 583 ntBASIC22.67■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms