Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 Y_RNA.12-201ENST00000362393 112 ntBASIC3.16□□□□□ -1.9
LRCH3Q96II8 RNU6-851P-201ENST00000384565 107 ntBASIC3.16□□□□□ -1.9
LRCH3Q96II8 MIR9-2-201ENST00000384838 87 ntBASIC3.16□□□□□ -1.9
LRCH3Q96II8 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.16□□□□□ -1.9
LRCH3Q96II8 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.16□□□□□ -1.9
LRCH3Q96II8 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC3.16□□□□□ -1.9
LRCH3Q96II8 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
LRCH3Q96II8 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC3.16□□□□□ -1.9
LRCH3Q96II8 CPD-202ENST00000543464 4007 ntTSL 2 BASIC3.15□□□□□ -1.9
LRCH3Q96II8 MIR520A-201ENST00000384862 85 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 MIR516A2-201ENST00000384888 90 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 MIR516A1-201ENST00000385033 90 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
LRCH3Q96II8 MIR548U-201ENST00000390728 81 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 AC104332.2-201ENST00000429959 156 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 HMGN2P3-201ENST00000433603 273 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 HMGN2P5-201ENST00000436882 273 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 AL357312.1-201ENST00000603879 298 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 AC005520.4-201ENST00000604337 90 ntBASIC3.15□□□□□ -1.91
LRCH3Q96II8 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
LRCH3Q96II8 MIRLET7F1-201ENST00000362202 87 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 MIR520C-201ENST00000385005 87 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 RNU2-7P-201ENST00000410794 178 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 AC093423.1-201ENST00000440817 142 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 RNA5SP217-201ENST00000515959 91 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 RNVU1-2-201ENST00000516326 135 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 MIR4648-201ENST00000580107 72 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 SNORD92-201ENST00000585078 85 ntBASIC3.14□□□□□ -1.91
LRCH3Q96II8 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC3.14□□□□□ -1.91
LRCH3Q96II8 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.14□□□□□ -1.91
LRCH3Q96II8 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
LRCH3Q96II8 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
LRCH3Q96II8 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.13□□□□□ -1.91
LRCH3Q96II8 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
LRCH3Q96II8 Y_RNA.119-201ENST00000363301 96 ntBASIC3.13□□□□□ -1.91
LRCH3Q96II8 SNORA8.1-201ENST00000384250 140 ntBASIC3.13□□□□□ -1.91
LRCH3Q96II8 RNU6ATAC42P-201ENST00000408637 95 ntBASIC3.13□□□□□ -1.91
LRCH3Q96II8 YWHAEP2-201ENST00000580066 112 ntBASIC3.13□□□□□ -1.91
LRCH3Q96II8 YWHAEP3-201ENST00000582767 121 ntBASIC3.13□□□□□ -1.91
LRCH3Q96II8 MIR4251-201ENST00000635819 61 ntBASIC3.13□□□□□ -1.91
LRCH3Q96II8 AL355596.1-201ENST00000565399 3996 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.12□□□□□ -1.91
LRCH3Q96II8 MIR424-201ENST00000362227 98 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 RNA5SP289-201ENST00000362332 137 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 RNU6-330P-201ENST00000363015 107 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 RNU1-112P-201ENST00000364401 164 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 RNU11-3P-201ENST00000391111 133 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 RNU6-1254P-201ENST00000391266 104 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 HMGN2P39-201ENST00000398005 273 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 AC245166.1-201ENST00000521012 253 ntBASIC3.12□□□□□ -1.91
LRCH3Q96II8 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
LRCH3Q96II8 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
LRCH3Q96II8 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
LRCH3Q96II8 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LRCH3Q96II8 AC073325.2-201ENST00000339545 159 ntBASIC3.11□□□□□ -1.91
LRCH3Q96II8 Y_RNA.36-201ENST00000362602 112 ntBASIC3.11□□□□□ -1.91
LRCH3Q96II8 RNU6-243P-201ENST00000391140 107 ntBASIC3.11□□□□□ -1.91
LRCH3Q96II8 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
LRCH3Q96II8 AC245517.4-201ENST00000448601 281 ntBASIC3.11□□□□□ -1.91
LRCH3Q96II8 snoU13.27-201ENST00000459278 104 ntBASIC3.11□□□□□ -1.91
LRCH3Q96II8 MIR3935-201ENST00000583472 104 ntBASIC3.11□□□□□ -1.91
LRCH3Q96II8 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.11□□□□□ -1.91
LRCH3Q96II8 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
LRCH3Q96II8 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.1□□□□□ -1.91
LRCH3Q96II8 SNORD114-30-201ENST00000364448 72 ntBASIC3.1□□□□□ -1.91
LRCH3Q96II8 RNU6-499P-201ENST00000365615 107 ntBASIC3.1□□□□□ -1.91
LRCH3Q96II8 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC3.1□□□□□ -1.91
LRCH3Q96II8 RNU6-466P-201ENST00000391224 103 ntBASIC3.1□□□□□ -1.91
LRCH3Q96II8 RN7SL75P-201ENST00000461926 281 ntBASIC3.1□□□□□ -1.91
LRCH3Q96II8 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
LRCH3Q96II8 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
LRCH3Q96II8 AP006437.1-201ENST00000641440 3685 ntBASIC3.09□□□□□ -1.91
LRCH3Q96II8 KTN1-206ENST00000413890 4473 ntAPPRIS ALT2 TSL 5 BASIC3.09□□□□□ -1.91
LRCH3Q96II8 Y_RNA.355-201ENST00000365462 98 ntBASIC3.09□□□□□ -1.91
LRCH3Q96II8 MIR942-201ENST00000401111 86 ntBASIC3.09□□□□□ -1.91
LRCH3Q96II8 RN7SL20P-201ENST00000488827 297 ntBASIC3.09□□□□□ -1.91
LRCH3Q96II8 SUB1P4-201ENST00000566062 339 ntBASIC3.09□□□□□ -1.91
LRCH3Q96II8 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.09□□□□□ -1.91
LRCH3Q96II8 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.09□□□□□ -1.91
LRCH3Q96II8 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.09□□□□□ -1.92
LRCH3Q96II8 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.92
LRCH3Q96II8 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.08□□□□□ -1.92
LRCH3Q96II8 MIR518E-201ENST00000385252 88 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 MIR1283-2-201ENST00000408621 87 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 RNA5SP425-201ENST00000410336 112 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 AC244023.1-201ENST00000426884 112 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 snoU13.17-201ENST00000458802 104 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 snoU13.2-201ENST00000459201 104 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 RNU7-41P-201ENST00000515917 61 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 AC242498.1-201ENST00000604134 111 ntBASIC3.08□□□□□ -1.92
LRCH3Q96II8 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.08□□□□□ -1.92
LRCH3Q96II8 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.07□□□□□ -1.92
LRCH3Q96II8 RNU6-154P-201ENST00000384306 106 ntBASIC3.07□□□□□ -1.92
LRCH3Q96II8 MIR9-1-201ENST00000385198 89 ntBASIC3.07□□□□□ -1.92
LRCH3Q96II8 RN7SKP223-201ENST00000410582 62 ntBASIC3.07□□□□□ -1.92
LRCH3Q96II8 HMGN2P23-201ENST00000456759 269 ntBASIC3.07□□□□□ -1.92
LRCH3Q96II8 AC007318.2-201ENST00000620999 243 ntBASIC3.07□□□□□ -1.92
LRCH3Q96II8 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.07□□□□□ -1.92
LRCH3Q96II8 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
LRCH3Q96II8 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms