Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC104027.1-201ENST00000521887 300 ntBASIC2.62□□□□□ -1.99
COL8A1P27658 CYP3A52P-201ENST00000563326 91 ntBASIC2.62□□□□□ -1.99
COL8A1P27658 AC005786.1-201ENST00000588553 154 ntBASIC2.62□□□□□ -1.99
COL8A1P27658 AC104996.3-201ENST00000590718 94 ntBASIC2.62□□□□□ -1.99
COL8A1P27658 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.62□□□□□ -1.99
COL8A1P27658 AP000648.3-201ENST00000623539 4507 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 RNU6-571P-201ENST00000384128 107 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 RNU6-1031P-201ENST00000384773 107 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.61□□□□□ -1.99
COL8A1P27658 RNU1-101P-201ENST00000391171 127 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 HSPE1P24-201ENST00000450782 238 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 RNA5SP24-201ENST00000516478 95 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 YWHAEP2-201ENST00000580066 112 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 MIR3064-201ENST00000581130 66 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 YWHAEP3-201ENST00000582767 121 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 MIR7111-201ENST00000619751 72 ntBASIC2.61□□□□□ -1.99
COL8A1P27658 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.61□□□□□ -1.99
COL8A1P27658 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL8A1P27658 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
COL8A1P27658 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL8A1P27658 LIG4-203ENST00000442234 3982 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
COL8A1P27658 Y_RNA.12-201ENST00000362393 112 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 SNORA8.1-201ENST00000384250 140 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 Y_RNA.491-201ENST00000384417 107 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 RNU6-1237P-201ENST00000384777 107 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 MIR526A1-201ENST00000384897 85 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 MIR548U-201ENST00000390728 81 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 MIR764-201ENST00000390811 85 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 AC005908.1-201ENST00000468701 347 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 AC141846.1-201ENST00000568348 142 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.6□□□□□ -1.99
COL8A1P27658 MAPK10-322ENST00000641485 4530 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 WWP1P1-201ENST00000466609 2769 ntBASIC2.6□□□□□ -1.99
COL8A1P27658 HDX-206ENST00000506585 6158 ntTSL 2 BASIC2.59□□□□□ -1.99
COL8A1P27658 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
COL8A1P27658 Y_RNA.36-201ENST00000362602 112 ntBASIC2.59□□□□□ -1.99
COL8A1P27658 RNU6-132P-201ENST00000383863 107 ntBASIC2.59□□□□□ -1.99
COL8A1P27658 TRAJ53-201ENST00000390485 66 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
COL8A1P27658 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.59□□□□□ -1.99
COL8A1P27658 RPS27P21-201ENST00000486977 252 ntBASIC2.59□□□□□ -1.99
COL8A1P27658 SNORD59.2-201ENST00000516873 68 ntBASIC2.59□□□□□ -1.99
COL8A1P27658 AC015712.3-201ENST00000559380 164 ntBASIC2.59□□□□□ -1.99
COL8A1P27658 AC073476.4-201ENST00000628409 72 ntBASIC2.59□□□□□ -1.99
COL8A1P27658 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2.59□□□□□ -2
COL8A1P27658 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.58□□□□□ -2
COL8A1P27658 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC2.58□□□□□ -2
COL8A1P27658 MIR148B-201ENST00000362252 99 ntBASIC2.58□□□□□ -2
COL8A1P27658 RNA5SP99-201ENST00000364020 114 ntBASIC2.58□□□□□ -2
COL8A1P27658 RNA5SP237-201ENST00000410414 113 ntBASIC2.58□□□□□ -2
COL8A1P27658 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC2.58□□□□□ -2
COL8A1P27658 AL603825.1-201ENST00000438481 80 ntBASIC2.58□□□□□ -2
COL8A1P27658 RNU6-75P-201ENST00000515944 104 ntBASIC2.58□□□□□ -2
COL8A1P27658 AC245166.1-201ENST00000521012 253 ntBASIC2.58□□□□□ -2
COL8A1P27658 MIR4500-201ENST00000579472 76 ntBASIC2.58□□□□□ -2
COL8A1P27658 SNORD92-201ENST00000585078 85 ntBASIC2.58□□□□□ -2
COL8A1P27658 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.58□□□□□ -2
COL8A1P27658 AC092435.3-201ENST00000565538 3654 ntBASIC2.58□□□□□ -2
COL8A1P27658 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
COL8A1P27658 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.57□□□□□ -2
COL8A1P27658 CREBRF-201ENST00000296953 7778 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
COL8A1P27658 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.57□□□□□ -2
COL8A1P27658 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC2.57□□□□□ -2
COL8A1P27658 SNORA25.4-201ENST00000363666 124 ntBASIC2.57□□□□□ -2
COL8A1P27658 RNU6ATAC3P-201ENST00000387974 126 ntBASIC2.57□□□□□ -2
COL8A1P27658 RNU6-220P-201ENST00000390919 107 ntBASIC2.57□□□□□ -2
COL8A1P27658 RNU6-630P-201ENST00000391258 106 ntBASIC2.57□□□□□ -2
COL8A1P27658 MIR942-201ENST00000401111 86 ntBASIC2.57□□□□□ -2
COL8A1P27658 RNA5SP385-201ENST00000515947 110 ntBASIC2.57□□□□□ -2
COL8A1P27658 RNA5SP217-201ENST00000515959 91 ntBASIC2.57□□□□□ -2
COL8A1P27658 SNORA74.3-201ENST00000517108 154 ntBASIC2.57□□□□□ -2
COL8A1P27658 RNU4ATAC9P-201ENST00000517146 126 ntBASIC2.57□□□□□ -2
COL8A1P27658 SNORA31.26-201ENST00000517250 137 ntBASIC2.57□□□□□ -2
COL8A1P27658 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.57□□□□□ -2
COL8A1P27658 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.56□□□□□ -2
COL8A1P27658 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.56□□□□□ -2
COL8A1P27658 SNORD36A-201ENST00000362874 73 ntBASIC2.56□□□□□ -2
COL8A1P27658 Y_RNA.283-201ENST00000364798 112 ntBASIC2.56□□□□□ -2
COL8A1P27658 RNU1-109P-201ENST00000383960 147 ntBASIC2.56□□□□□ -2
COL8A1P27658 RNU6-949P-201ENST00000384040 107 ntBASIC2.56□□□□□ -2
COL8A1P27658 SNORA3.2-201ENST00000408221 125 ntBASIC2.56□□□□□ -2
COL8A1P27658 AL591806.2-201ENST00000433122 173 ntBASIC2.56□□□□□ -2
COL8A1P27658 AC027119.1-201ENST00000440877 241 ntBASIC2.56□□□□□ -2
COL8A1P27658 snoU13.23-201ENST00000458863 104 ntBASIC2.56□□□□□ -2
COL8A1P27658 RNU7-43P-201ENST00000516554 64 ntBASIC2.56□□□□□ -2
COL8A1P27658 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC2.56□□□□□ -2
COL8A1P27658 MIR4506-201ENST00000584693 77 ntBASIC2.56□□□□□ -2
COL8A1P27658 AL662814.1-201ENST00000617364 121 ntBASIC2.56□□□□□ -2
COL8A1P27658 AL513423.1-201ENST00000621695 132 ntBASIC2.56□□□□□ -2
COL8A1P27658 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
COL8A1P27658 RNA5SP68-201ENST00000363885 119 ntBASIC2.55□□□□□ -2
COL8A1P27658 RNU6-614P-201ENST00000384369 107 ntBASIC2.55□□□□□ -2
COL8A1P27658 SNORD38B-201ENST00000384690 67 ntBASIC2.55□□□□□ -2
COL8A1P27658 MIR1289-2-201ENST00000408360 111 ntBASIC2.55□□□□□ -2
COL8A1P27658 AC108210.2-201ENST00000503681 201 ntBASIC2.55□□□□□ -2
COL8A1P27658 RNA5SP148-201ENST00000516527 94 ntBASIC2.55□□□□□ -2
COL8A1P27658 AC138749.4-201ENST00000563970 127 ntBASIC2.55□□□□□ -2
COL8A1P27658 MIR6817-201ENST00000615588 66 ntBASIC2.55□□□□□ -2
COL8A1P27658 U6.59-201ENST00000615686 107 ntBASIC2.55□□□□□ -2
COL8A1P27658 AC008133.2-201ENST00000624540 351 ntBASIC2.55□□□□□ -2
COL8A1P27658 SNORD38B-202ENST00000625943 69 ntBASIC2.55□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 120.4 ms