Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 Y_RNA.265-201ENST00000364677 108 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 RNA5SP190-201ENST00000365222 118 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 RNU4-52P-201ENST00000384209 138 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC2□□□□□ -2.09
SLC44A3Q8N4M1 HMGN2P39-201ENST00000398005 273 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 SNORD23.1-201ENST00000408212 104 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 RNA5SP270-201ENST00000411361 118 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 CALM2P4-201ENST00000430810 426 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC2□□□□□ -2.09
SLC44A3Q8N4M1 HMGN2P32-201ENST00000444648 269 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2□□□□□ -2.09
SLC44A3Q8N4M1 RNVU1-2-201ENST00000516326 135 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 SNORD36C-201ENST00000516733 66 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 MIR514B-201ENST00000516774 80 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 RNU6-1116P-201ENST00000517269 99 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 MIR3683-201ENST00000580847 82 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 AC078899.2-201ENST00000595282 212 ntBASIC2□□□□□ -2.09
SLC44A3Q8N4M1 MIR499A-201ENST00000384903 122 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 MIR802-201ENST00000390235 94 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 SNORA48.1-201ENST00000390879 135 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 RNA5SP465-201ENST00000391195 109 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 SNORD13-201ENST00000459299 104 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 RPS26P48-201ENST00000491713 339 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 AC114811.1-201ENST00000507207 168 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 SNORA25.15-201ENST00000516487 89 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 AC002984.1-201ENST00000591692 448 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 AC025166.1-201ENST00000612411 163 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 AC027279.3-201ENST00000625055 122 ntBASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.99□□□□□ -2.09
SLC44A3Q8N4M1 AL391516.1-201ENST00000554380 2449 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 RNU6-1084P-201ENST00000362498 107 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 Y_RNA.35-201ENST00000362601 101 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 SNORA4.2-201ENST00000365313 147 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 RNU6-1189P-201ENST00000383958 107 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 Y_RNA.440-201ENST00000384120 114 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 RNU6-321P-201ENST00000410912 106 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 AC003989.2-201ENST00000440224 169 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 AC069257.2-201ENST00000441819 155 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 CYCTP-201ENST00000504253 315 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 SUB1P4-201ENST00000566062 339 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 MTND5P18-201ENST00000445624 1801 ntBASIC1.98□□□□□ -2.09
SLC44A3Q8N4M1 Y_RNA.346-201ENST00000365385 112 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 Y_RNA.366-201ENST00000365540 102 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 RNU6-424P-201ENST00000384367 105 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 SNORD116-21-201ENST00000384507 92 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 RNU6-296P-201ENST00000384608 107 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 MIR518E-201ENST00000385252 88 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 RNU11-3P-201ENST00000391111 133 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 RNA5SP437-201ENST00000517249 129 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 MIR4448-201ENST00000584360 86 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 SNORA28-201ENST00000606769 126 ntBASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
SLC44A3Q8N4M1 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-349P-201ENST00000362402 107 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 SNORA25.9-201ENST00000365087 128 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 MIR548A3-201ENST00000385297 97 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 U8.16-201ENST00000391279 133 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-830P-201ENST00000516353 107 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 RNU1-40P-201ENST00000516816 164 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 RNU1-97P-201ENST00000516872 164 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 AC015726.2-201ENST00000620112 122 ntBASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.96□□□□□ -2.1
SLC44A3Q8N4M1 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-661P-201ENST00000362409 107 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-880P-201ENST00000384526 107 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 AL627390.1-201ENST00000396055 340 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 RNU4-62P-201ENST00000410125 130 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 RNA5SP338-201ENST00000410495 85 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 AP1B1P2-201ENST00000416196 106 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-717P-201ENST00000459076 104 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 AC025033.1-201ENST00000463883 194 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 AP003484.1-201ENST00000530974 250 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 AL137067.1-201ENST00000615933 120 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 AC084768.2-201ENST00000622736 221 ntBASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
SLC44A3Q8N4M1 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNY1P10-201ENST00000363268 113 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-112P-201ENST00000363599 104 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 SNORA2.2-201ENST00000365473 135 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-1031P-201ENST00000384773 107 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 MIR1263-201ENST00000408324 86 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RN7SKP200-201ENST00000410564 320 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNA5SP136-201ENST00000410906 107 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNA5SP501-201ENST00000410990 112 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 AC087499.4-201ENST00000448505 178 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 Y_RNA.649-201ENST00000459077 103 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RPS27P21-201ENST00000486977 252 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-240P-201ENST00000516098 97 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNU7-193P-201ENST00000516723 65 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 MIR4287-201ENST00000579398 78 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 MIR8081-201ENST00000611533 95 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 AL121890.5-201ENST00000620848 304 ntBASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-833P-201ENST00000363486 107 ntBASIC1.93□□□□□ -2.1
SLC44A3Q8N4M1 RNU6-163P-201ENST00000384396 106 ntBASIC1.93□□□□□ -2.1
SLC44A3Q8N4M1 Y_RNA.528-201ENST00000384575 108 ntBASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 370 ms