RNA–Protein interactions for RNA: ENST00000516816.1

RNU1-40P-201, Transcript of RNA, U1 small nuclear 40, pseudogene, humanhuman

BASIC

Gene RNU1-40P, Length 164 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU1-40P-201ENST00000516816 CHIC1Q5VXU3 224 aa4.38□□□□□ -1.71
RNU1-40P-201ENST00000516816 AEBP2Q6ZN18 517 aaPredicted RBP4.29□□□□□ -1.72
RNU1-40P-201ENST00000516816 NISCHQ9Y2I1 1504 aa3.85□□□□□ -1.79
RNU1-40P-201ENST00000516816 SENP3Q9H4L4 574 aaPredicted RBP3.78□□□□□ -1.8
RNU1-40P-201ENST00000516816 PLPPR3Q6T4P5 718 aa3.77□□□□□ -1.81
RNU1-40P-201ENST00000516816 PHF23Q9BUL5 403 aaPredicted RBP3.7□□□□□ -1.82
RNU1-40P-201ENST00000516816 NCBP3Q53F19 620 aaKnown RBP3.42□□□□□ -1.86
RNU1-40P-201ENST00000516816 SUPT5HO00267 1087 aaKnown RBP3.36□□□□□ -1.87
RNU1-40P-201ENST00000516816 DCAF8L2P0C7V8 631 aa3.36□□□□□ -1.87
RNU1-40P-201ENST00000516816 FOXD1Q16676 465 aa3.36□□□□□ -1.87
RNU1-40P-201ENST00000516816 SCAF1Q9H7N4 1312 aaKnown RBP3.36□□□□□ -1.87
RNU1-40P-201ENST00000516816 SLC24A1O60721 1099 aa3.31□□□□□ -1.88
RNU1-40P-201ENST00000516816 CCDC180Q9P1Z9 1646 aa3.3□□□□□ -1.88
RNU1-40P-201ENST00000516816 SHROOM4Q9ULL8 1493 aa3.3□□□□□ -1.88
RNU1-40P-201ENST00000516816 ZEB1P37275 1124 aaPredicted RBP3.3□□□□□ -1.88
RNU1-40P-201ENST00000516816 SLC4A1APQ9BWU0 796 aaKnown RBP3.26□□□□□ -1.89
RNU1-40P-201ENST00000516816 HRCP23327 699 aa3.25□□□□□ -1.89
RNU1-40P-201ENST00000516816 ADRA2BP18089 450 aa3.24□□□□□ -1.89
RNU1-40P-201ENST00000516816 KCNA4P22459 653 aa3.24□□□□□ -1.89
RNU1-40P-201ENST00000516816 TRIM26Q12899 539 aaPredicted RBP3.24□□□□□ -1.89
RNU1-40P-201ENST00000516816 PELP1Q8IZL8 1130 aaKnown RBP3.24□□□□□ -1.89
RNU1-40P-201ENST00000516816 PCGF6Q9BYE7 350 aa3.24□□□□□ -1.89
RNU1-40P-201ENST00000516816 EHMT2Q96KQ7 1210 aa3.23□□□□□ -1.89
RNU1-40P-201ENST00000516816 PPP6R1Q9UPN7 881 aa3.23□□□□□ -1.89
RNU1-40P-201ENST00000516816 PPP4R3CPQ6ZMV5 832 aa3.22□□□□□ -1.89
RNU1-40P-201ENST00000516816 PIAS4Q8N2W9 510 aaPredicted RBP3.22□□□□□ -1.89
RNU1-40P-201ENST00000516816 ZCCHC6Q5VYS8 1495 aaKnown RBP3.22□□□□□ -1.89
RNU1-40P-201ENST00000516816 MSH5O43196 834 aa3.21□□□□□ -1.9
RNU1-40P-201ENST00000516816 MYT1Q01538 1121 aa3.21□□□□□ -1.9
RNU1-40P-201ENST00000516816 CNKSR2Q8WXI2 1034 aa3.21□□□□□ -1.9
RNU1-40P-201ENST00000516816 TRIM41Q8WV44 630 aa3.2□□□□□ -1.9
RNU1-40P-201ENST00000516816 DCAF1Q9Y4B6 1507 aa3.19□□□□□ -1.9
RNU1-40P-201ENST00000516816 DNAJC5BQ9UF47 199 aa3.18□□□□□ -1.9
RNU1-40P-201ENST00000516816 TTBK1Q5TCY1 1321 aaPredicted RBP3.18□□□□□ -1.9
RNU1-40P-201ENST00000516816 LOC105371045A0A1W2PR82 267 aa3.14□□□□□ -1.91
RNU1-40P-201ENST00000516816 CENPBP07199 599 aaPredicted RBP3.14□□□□□ -1.91
RNU1-40P-201ENST00000516816 APLP2Q06481 763 aa3.12□□□□□ -1.91
RNU1-40P-201ENST00000516816 ATXN8OSP0DMR3 200 aa3.11□□□□□ -1.91
RNU1-40P-201ENST00000516816 CCER1Q8TC90 406 aaPredicted RBP3.11□□□□□ -1.91
RNU1-40P-201ENST00000516816 CSRNP3Q8WYN3 585 aa3.11□□□□□ -1.91
RNU1-40P-201ENST00000516816 MYO15BQ96JP2 1530 aa3.1□□□□□ -1.91
RNU1-40P-201ENST00000516816 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP3.1□□□□□ -1.91
RNU1-40P-201ENST00000516816 NPM3O75607 178 aaKnown RBP3.1□□□□□ -1.91
RNU1-40P-201ENST00000516816 HNRNPUL2Q1KMD3 747 aaKnown RBP3.1□□□□□ -1.91
RNU1-40P-201ENST00000516816 AMER1Q5JTC6 1135 aaPredicted RBP3.1□□□□□ -1.91
RNU1-40P-201ENST00000516816 FAM9AQ8IZU1 332 aaPredicted RBP3.09□□□□□ -1.91
RNU1-40P-201ENST00000516816 FOXD4L1Q9NU39 408 aa3.09□□□□□ -1.91
RNU1-40P-201ENST00000516816 RNF216Q9NWF9 866 aaPredicted RBP3.09□□□□□ -1.91
RNU1-40P-201ENST00000516816 NACADO15069 1562 aa3.08□□□□□ -1.92
RNU1-40P-201ENST00000516816 DAXXQ9UER7 740 aaPredicted RBP3.07□□□□□ -1.92
RNU1-40P-201ENST00000516816 RB1CC1Q8TDY2 1594 aa3.07□□□□□ -1.92
RNU1-40P-201ENST00000516816 UBTFP17480 764 aaKnown RBP3.06□□□□□ -1.92
RNU1-40P-201ENST00000516816 PPARGC1BQ86YN6 1023 aaKnown RBP3.06□□□□□ -1.92
RNU1-40P-201ENST00000516816 DIEXFQ68CQ4 756 aaKnown RBP3.05□□□□□ -1.92
RNU1-40P-201ENST00000516816 RSF1Q96T23 1441 aaPredicted RBP3.04□□□□□ -1.92
RNU1-40P-201ENST00000516816 ERICH6Q7L0X2 663 aa3.04□□□□□ -1.92
RNU1-40P-201ENST00000516816 SCRIBQ14160 1630 aa3.04□□□□□ -1.92
RNU1-40P-201ENST00000516816 ZNF316A6NFI3 1004 aaPredicted RBP3.03□□□□□ -1.92
RNU1-40P-201ENST00000516816 ABCC9O60706 1549 aa3.03□□□□□ -1.92
RNU1-40P-201ENST00000516816 ACIN1Q9UKV3 1341 aaKnown RBP3.02□□□□□ -1.93
RNU1-40P-201ENST00000516816 EEA1Q15075 1411 aa3.02□□□□□ -1.93
RNU1-40P-201ENST00000516816 CLSPNQ9HAW4 1339 aa3.01□□□□□ -1.93
RNU1-40P-201ENST00000516816 MYCNP04198 464 aaPredicted RBP3□□□□□ -1.93
RNU1-40P-201ENST00000516816 SAMD1Q6SPF0 538 aaPredicted RBP3□□□□□ -1.93
RNU1-40P-201ENST00000516816 BAZ1AQ9NRL2 1556 aaPredicted RBP3□□□□□ -1.93
RNU1-40P-201ENST00000516816 FBXO3Q9UK99 471 aa2.99□□□□□ -1.93
RNU1-40P-201ENST00000516816 GTF3C3Q9Y5Q9 886 aa2.99□□□□□ -1.93
RNU1-40P-201ENST00000516816 TNIKQ9UKE5 1360 aa2.99□□□□□ -1.93
RNU1-40P-201ENST00000516816 HOXD11P31277 338 aaPredicted RBP2.97□□□□□ -1.93
RNU1-40P-201ENST00000516816 DMRT2Q9Y5R5 561 aa2.97□□□□□ -1.93
RNU1-40P-201ENST00000516816 WIZO95785 1651 aa2.96□□□□□ -1.94
RNU1-40P-201ENST00000516816 NEFLP07196 543 aa2.95□□□□□ -1.94
RNU1-40P-201ENST00000516816 MROH2BQ7Z745 1585 aa2.95□□□□□ -1.94
RNU1-40P-201ENST00000516816 WRNQ14191 1432 aaPredicted RBP eCLIP2.94□□□□□ -1.94
RNU1-40P-201ENST00000516816 NEUROD1Q13562 356 aa2.94□□□□□ -1.94
RNU1-40P-201ENST00000516816 YTHDC1Q96MU7 727 aaKnown RBP2.94□□□□□ -1.94
RNU1-40P-201ENST00000516816 TIMELESSQ9UNS1 1208 aa2.94□□□□□ -1.94
RNU1-40P-201ENST00000516816 GOLGA3Q08378 1498 aa2.94□□□□□ -1.94
RNU1-40P-201ENST00000516816 TOP2AP11388 1531 aaKnown RBP2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 CCDC88BA6NC98 1476 aa2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 CECR2Q9BXF3 1484 aa2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 CEP164Q9UPV0 1460 aa2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 RANGAP1P46060 587 aaPredicted RBP2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 MAPK8IP2Q13387 824 aaPredicted RBP2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 CEP162Q5TB80 1403 aa2.93□□□□□ -1.94
RNU1-40P-201ENST00000516816 ARXQ96QS3 562 aa2.92□□□□□ -1.94
RNU1-40P-201ENST00000516816 SMARCA4P51532 1647 aa2.92□□□□□ -1.94
RNU1-40P-201ENST00000516816 ANP32CO43423 234 aa2.91□□□□□ -1.94
RNU1-40P-201ENST00000516816 CLIP1P30622 1438 aa2.91□□□□□ -1.94
RNU1-40P-201ENST00000516816 BAZ1BQ9UIG0 1483 aaKnown RBP2.9□□□□□ -1.94
RNU1-40P-201ENST00000516816 MIER1Q8N108 512 aa2.9□□□□□ -1.95
RNU1-40P-201ENST00000516816 ATP1B4Q9UN42 357 aaPredicted RBP2.9□□□□□ -1.95
RNU1-40P-201ENST00000516816 SMARCA2P51531 1590 aa2.9□□□□□ -1.95
RNU1-40P-201ENST00000516816 UNC13AQ9UPW8 1703 aa2.9□□□□□ -1.95
RNU1-40P-201ENST00000516816 GRWD1Q9BQ67 446 aaKnown RBP eCLIP2.89□□□□□ -1.95
RNU1-40P-201ENST00000516816 RTN4Q9NQC3 1192 aaKnown RBP2.89□□□□□ -1.95
RNU1-40P-201ENST00000516816 MYT1LQ9UL68 1186 aa2.89□□□□□ -1.95
RNU1-40P-201ENST00000516816 ZBTB12Q9Y330 459 aaPredicted RBP2.89□□□□□ -1.95
RNU1-40P-201ENST00000516816 KIF21BO75037 1637 aa2.89□□□□□ -1.95
RNU1-40P-201ENST00000516816 ABCC8Q09428 1581 aa2.88□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 12.3 ms