Protein–RNA interactions for Protein: Q15012

LAPTM4A, Lysosomal-associated transmembrane protein 4A, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LAPTM4AQ15012 AC245517.4-201ENST00000448601 281 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 SNORD123-201ENST00000459473 70 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 RNU6-542P-201ENST00000516405 103 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 MIR1254-2-201ENST00000579553 63 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 MIR3938-201ENST00000582157 103 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 U6.81-201ENST00000612550 106 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 Z97988.1-201ENST00000637697 135 ntBASIC3.2□□□□□ -1.9
LAPTM4AQ15012 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
LAPTM4AQ15012 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.2□□□□□ -1.9
LAPTM4AQ15012 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.2□□□□□ -1.9
LAPTM4AQ15012 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 RNU6-833P-201ENST00000363486 107 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 RNA5SP72-201ENST00000364442 117 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 snoU13.16-201ENST00000459350 104 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 RNU7-12P-201ENST00000516030 62 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 SNORA31.10-201ENST00000516482 106 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 MIR3160-1-201ENST00000577972 85 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 MIR3690-201ENST00000580266 75 ntBASIC3.19□□□□□ -1.9
LAPTM4AQ15012 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.19□□□□□ -1.9
LAPTM4AQ15012 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 SNORD9-201ENST00000362566 104 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 Y_RNA.119-201ENST00000363301 96 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RNU1-33P-201ENST00000364249 162 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 MIR136-201ENST00000385207 82 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RNA5SP237-201ENST00000410414 113 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RNU2-48P-201ENST00000410694 191 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RNU6-1052P-201ENST00000411398 104 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 AL035423.1-201ENST00000420331 213 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 CST2P1-201ENST00000425770 87 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RNA5SP168-201ENST00000516642 112 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RNU6-719P-201ENST00000516671 104 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 AP003355.3-201ENST00000623465 114 ntBASIC3.18□□□□□ -1.9
LAPTM4AQ15012 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 RASSF8-210ENST00000541490 5505 ntAPPRIS P1 TSL 5 BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 ZNF654-201ENST00000309495 4957 ntAPPRIS P2 TSL 1 (best) BASIC3.18□□□□□ -1.9
LAPTM4AQ15012 AL353746.1-201ENST00000566293 6881 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 ATP2B1-203ENST00000393164 3127 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SNORD56.3-201ENST00000363507 71 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 RNU6-668P-201ENST00000364180 107 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 RNU6-1335P-201ENST00000365426 107 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 MIR515-2-201ENST00000384883 83 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 MIR515-1-201ENST00000384884 83 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 AC019129.1-201ENST00000403786 261 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 AC093578.1-201ENST00000415219 368 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SCARNA21.1-201ENST00000515996 128 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SCARNA17.1-201ENST00000516211 143 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SCARNA17.2-201ENST00000516334 143 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 RNU2-58P-201ENST00000516403 183 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SNORA64.4-201ENST00000516632 81 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 RPL12P50-201ENST00000603116 116 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SCARNA17.4-201ENST00000614296 143 ntBASIC3.17□□□□□ -1.9
LAPTM4AQ15012 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 CLCA4-201ENST00000370563 3211 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
LAPTM4AQ15012 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
LAPTM4AQ15012 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.16□□□□□ -1.9
LAPTM4AQ15012 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.16□□□□□ -1.9
LAPTM4AQ15012 Y_RNA.375-201ENST00000365625 101 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 MIR218-1-201ENST00000384999 110 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 AL606490.4-201ENST00000423117 127 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 HSPE1P9-201ENST00000440046 311 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 AL162274.2-201ENST00000614406 332 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 5S_rRNA.12-201ENST00000617631 107 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 SNORA50A-202ENST00000629536 136 ntBASIC3.16□□□□□ -1.9
LAPTM4AQ15012 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC3.16□□□□□ -1.9
LAPTM4AQ15012 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
LAPTM4AQ15012 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
LAPTM4AQ15012 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
LAPTM4AQ15012 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
LAPTM4AQ15012 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.9
LAPTM4AQ15012 RNY4P3-201ENST00000365254 95 ntBASIC3.15□□□□□ -1.91
LAPTM4AQ15012 RNU6-35P-201ENST00000384530 107 ntBASIC3.15□□□□□ -1.91
LAPTM4AQ15012 AC097510.1-201ENST00000510945 133 ntBASIC3.15□□□□□ -1.91
LAPTM4AQ15012 AL096861.1-201ENST00000610899 123 ntBASIC3.15□□□□□ -1.91
LAPTM4AQ15012 MIR6076-201ENST00000617521 113 ntBASIC3.15□□□□□ -1.91
LAPTM4AQ15012 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.15□□□□□ -1.91
LAPTM4AQ15012 AC023934.1-201ENST00000574529 2389 ntBASIC3.15□□□□□ -1.91
LAPTM4AQ15012 LRMP-221ENST00000636465 4540 ntAPPRIS ALT2 TSL 5 BASIC3.14□□□□□ -1.91
LAPTM4AQ15012 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
LAPTM4AQ15012 Y_RNA.510-201ENST00000384511 114 ntBASIC3.14□□□□□ -1.91
LAPTM4AQ15012 Y_RNA.537-201ENST00000384626 109 ntBASIC3.14□□□□□ -1.91
LAPTM4AQ15012 TRAJ1-201ENST00000390536 62 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
LAPTM4AQ15012 SNORA75.1-201ENST00000391130 148 ntBASIC3.14□□□□□ -1.91
LAPTM4AQ15012 RNA5SP252-201ENST00000391131 119 ntBASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms