Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-70P-201ENST00000516438 60 ntBASIC2.82□□□□□ -1.96
COL8A1P27658 RNU6-579P-201ENST00000516879 102 ntBASIC2.82□□□□□ -1.96
COL8A1P27658 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.82□□□□□ -1.96
COL8A1P27658 AL035425.3-201ENST00000564206 4996 ntBASIC2.82□□□□□ -1.96
COL8A1P27658 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
COL8A1P27658 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.82□□□□□ -1.96
COL8A1P27658 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL8A1P27658 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC2.81□□□□□ -1.96
COL8A1P27658 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.81□□□□□ -1.96
COL8A1P27658 RNU6-862P-201ENST00000362804 105 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 Y_RNA.98-201ENST00000363109 102 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 Y_RNA.99-201ENST00000363138 105 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 MIR887-201ENST00000401258 79 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 RNU6-1328P-201ENST00000410938 106 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 RNU6-602P-201ENST00000411155 105 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 RNU7-48P-201ENST00000458875 63 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 FGF7P7-201ENST00000514120 227 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 RNU6-807P-201ENST00000516805 107 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC2.81□□□□□ -1.96
COL8A1P27658 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC2.81□□□□□ -1.96
COL8A1P27658 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC2.81□□□□□ -1.96
COL8A1P27658 IGKV1OR2-6-201ENST00000603485 277 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 MIR8054-201ENST00000620877 86 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 UCA1.1-201ENST00000620952 75 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 MIR1297-201ENST00000637311 77 ntBASIC2.81□□□□□ -1.96
COL8A1P27658 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
COL8A1P27658 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
COL8A1P27658 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL8A1P27658 SNORA71.1-201ENST00000364523 117 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 RNU6-471P-201ENST00000383944 106 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 RNU6-800P-201ENST00000384473 103 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 MIR592-201ENST00000384959 97 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 RNU6-1077P-201ENST00000410506 102 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 RNA5SP184-201ENST00000411071 108 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 AC003685.2-201ENST00000422795 395 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 SEM1P1-201ENST00000506694 209 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 MIR3199-1-201ENST00000582434 88 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 ZNRD1-AS1_1.6-201ENST00000610339 68 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.8□□□□□ -1.96
COL8A1P27658 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL8A1P27658 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC2.8□□□□□ -1.96
COL8A1P27658 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC2.8□□□□□ -1.96
COL8A1P27658 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC2.8□□□□□ -1.96
COL8A1P27658 JMJD1C-210ENST00000542921 8149 ntAPPRIS ALT2 TSL 1 (best) BASIC2.79□□□□□ -1.96
COL8A1P27658 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.79□□□□□ -1.96
COL8A1P27658 RNU6-161P-201ENST00000363051 106 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 Y_RNA.508-201ENST00000384502 114 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 Y_RNA.532-201ENST00000384590 113 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 RNU6-160P-201ENST00000384591 107 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 RNU6-296P-201ENST00000384608 107 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 RNA5SP109-201ENST00000391010 116 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 RNU6-1086P-201ENST00000410930 100 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 AC006483.1-201ENST00000487308 313 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 RNU7-137P-201ENST00000516788 62 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 RNU6-667P-201ENST00000517186 102 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 NDUFB9P3-201ENST00000521269 501 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 MIR4796-201ENST00000580742 81 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 AL512598.1-201ENST00000610158 273 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 AC243994.1-201ENST00000618627 109 ntBASIC2.79□□□□□ -1.96
COL8A1P27658 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.79□□□□□ -1.96
COL8A1P27658 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC2.79□□□□□ -1.96
COL8A1P27658 GABRG2-215ENST00000639213 9960 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL8A1P27658 MAPK10-362ENST00000641864 4484 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
COL8A1P27658 RNU5F-1-201ENST00000362507 117 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 RNU1-70P-201ENST00000362618 164 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 MIR561-201ENST00000385216 97 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 SNORD30.1-201ENST00000391309 70 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.78□□□□□ -1.96
COL8A1P27658 AC008413.1-201ENST00000511864 177 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 RNU7-79P-201ENST00000516082 62 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 MIR8066-201ENST00000617280 78 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 AP001362.1-201ENST00000625165 124 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 U6.111-201ENST00000636093 83 ntBASIC2.78□□□□□ -1.96
COL8A1P27658 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL8A1P27658 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL8A1P27658 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC2.78□□□□□ -1.96
COL8A1P27658 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL8A1P27658 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL8A1P27658 HSBP1P2-201ENST00000299671 229 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 AC062016.1-201ENST00000355719 319 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 RNA5SP42-201ENST00000364278 115 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 RNU6-587P-201ENST00000391282 106 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 AL139132.1-201ENST00000431587 344 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC2.77□□□□□ -1.97
COL8A1P27658 RNU1-41P-201ENST00000516161 162 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 RNU6-1108P-201ENST00000516308 104 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 RNU1-48P-201ENST00000516400 162 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 AC105081.1-201ENST00000617727 106 ntBASIC2.77□□□□□ -1.97
COL8A1P27658 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.77□□□□□ -1.97
COL8A1P27658 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL8A1P27658 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.77□□□□□ -1.97
COL8A1P27658 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
COL8A1P27658 EFR3A-202ENST00000519656 5247 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL8A1P27658 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL8A1P27658 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
COL8A1P27658 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC2.76□□□□□ -1.97
COL8A1P27658 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC2.76□□□□□ -1.97
COL8A1P27658 Y_RNA.354-201ENST00000365448 111 ntBASIC2.76□□□□□ -1.97
COL8A1P27658 RNU6-540P-201ENST00000384622 101 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms