Protein–RNA interactions for Protein: O75150

RNF40, E3 ubiquitin-protein ligase BRE1B, humanhuman

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40O75150 FAS-AS1.1-201ENST00000615327 126 ntBASIC3.55□□□□□ -1.84
RNF40O75150 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RNF40O75150 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
RNF40O75150 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.55□□□□□ -1.84
RNF40O75150 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC3.55□□□□□ -1.84
RNF40O75150 AL356274.2-201ENST00000624379 3752 ntBASIC3.55□□□□□ -1.84
RNF40O75150 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.55□□□□□ -1.84
RNF40O75150 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
RNF40O75150 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.54□□□□□ -1.84
RNF40O75150 Y_RNA.173-201ENST00000363776 113 ntBASIC3.54□□□□□ -1.84
RNF40O75150 Y_RNA.370-201ENST00000365589 108 ntBASIC3.54□□□□□ -1.84
RNF40O75150 U8.16-201ENST00000391279 133 ntBASIC3.54□□□□□ -1.84
RNF40O75150 MIR548G-201ENST00000408442 89 ntBASIC3.54□□□□□ -1.84
RNF40O75150 RNU6-958P-201ENST00000516995 106 ntBASIC3.54□□□□□ -1.84
RNF40O75150 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC3.54□□□□□ -1.84
RNF40O75150 SCARNA15.3-201ENST00000626315 122 ntBASIC3.54□□□□□ -1.84
RNF40O75150 SCARNA4.1-201ENST00000628597 123 ntBASIC3.54□□□□□ -1.84
RNF40O75150 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
RNF40O75150 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
RNF40O75150 RNA5SP139-201ENST00000364340 117 ntBASIC3.53□□□□□ -1.84
RNF40O75150 RNU6-342P-201ENST00000384521 104 ntBASIC3.53□□□□□ -1.84
RNF40O75150 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.53□□□□□ -1.84
RNF40O75150 RPS29P28-201ENST00000446439 141 ntBASIC3.53□□□□□ -1.84
RNF40O75150 SNORD59.2-201ENST00000516873 68 ntBASIC3.53□□□□□ -1.84
RNF40O75150 MIR5680-201ENST00000577577 84 ntBASIC3.53□□□□□ -1.84
RNF40O75150 Y_RNA.788-201ENST00000622394 112 ntBASIC3.53□□□□□ -1.84
RNF40O75150 SNORD3E-202ENST00000627253 216 ntBASIC3.53□□□□□ -1.84
RNF40O75150 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.53□□□□□ -1.84
RNF40O75150 AC093831.2-201ENST00000624393 3427 ntBASIC3.53□□□□□ -1.84
RNF40O75150 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF40O75150 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
RNF40O75150 RNU6-478P-201ENST00000363904 110 ntBASIC3.52□□□□□ -1.85
RNF40O75150 RNU6-220P-201ENST00000390919 107 ntBASIC3.52□□□□□ -1.85
RNF40O75150 RN7SL75P-201ENST00000461926 281 ntBASIC3.52□□□□□ -1.85
RNF40O75150 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3.52□□□□□ -1.85
RNF40O75150 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC3.52□□□□□ -1.85
RNF40O75150 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.52□□□□□ -1.85
RNF40O75150 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.52□□□□□ -1.85
RNF40O75150 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.52□□□□□ -1.85
RNF40O75150 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
RNF40O75150 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.51□□□□□ -1.85
RNF40O75150 RNA5SP374-201ENST00000362939 125 ntBASIC3.51□□□□□ -1.85
RNF40O75150 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
RNF40O75150 Z98742.3-201ENST00000418637 326 ntBASIC3.51□□□□□ -1.85
RNF40O75150 HSPE1P9-201ENST00000440046 311 ntBASIC3.51□□□□□ -1.85
RNF40O75150 RNU7-67P-201ENST00000459003 62 ntBASIC3.51□□□□□ -1.85
RNF40O75150 MIR4276-201ENST00000584832 70 ntBASIC3.51□□□□□ -1.85
RNF40O75150 PLD1-217ENST00000627725 174 ntTSL 5 BASIC3.51□□□□□ -1.85
RNF40O75150 AC096644.4-201ENST00000563417 2912 ntBASIC3.5□□□□□ -1.85
RNF40O75150 AC005336.3-201ENST00000623833 2679 ntBASIC3.5□□□□□ -1.85
RNF40O75150 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
RNF40O75150 RNA5SP217-201ENST00000515959 91 ntBASIC3.5□□□□□ -1.85
RNF40O75150 MIR4325-201ENST00000583049 90 ntBASIC3.5□□□□□ -1.85
RNF40O75150 CYP19A1-220ENST00000613097 123 ntTSL 5 BASIC3.5□□□□□ -1.85
RNF40O75150 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
RNF40O75150 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
RNF40O75150 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
RNF40O75150 ZNF83-201ENST00000301096 2599 ntAPPRIS P1 TSL 3 BASIC3.49□□□□□ -1.85
RNF40O75150 MIR516B2-201ENST00000385190 85 ntBASIC3.49□□□□□ -1.85
RNF40O75150 AC087499.7-201ENST00000441958 109 ntBASIC3.49□□□□□ -1.85
RNF40O75150 RNU1-98P-201ENST00000458992 160 ntBASIC3.49□□□□□ -1.85
RNF40O75150 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.49□□□□□ -1.85
RNF40O75150 Z83843.1-201ENST00000604070 3685 ntBASIC3.49□□□□□ -1.85
RNF40O75150 Y_RNA.448-201ENST00000384185 108 ntBASIC3.48□□□□□ -1.85
RNF40O75150 SNORD28B-201ENST00000390993 75 ntBASIC3.48□□□□□ -1.85
RNF40O75150 RNU6-129P-201ENST00000391022 107 ntBASIC3.48□□□□□ -1.85
RNF40O75150 RN7SKP111-201ENST00000410349 271 ntBASIC3.48□□□□□ -1.85
RNF40O75150 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC3.48□□□□□ -1.85
RNF40O75150 FAM106DP-201ENST00000586416 501 ntBASIC3.48□□□□□ -1.85
RNF40O75150 RNU6-90P-201ENST00000606352 106 ntBASIC3.48□□□□□ -1.85
RNF40O75150 MAPK10-362ENST00000641864 4484 ntBASIC3.48□□□□□ -1.85
RNF40O75150 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
RNF40O75150 RNA5SP133-201ENST00000363368 119 ntBASIC3.47□□□□□ -1.85
RNF40O75150 SNORD115-37-201ENST00000363768 82 ntBASIC3.47□□□□□ -1.85
RNF40O75150 HMGN1P33-201ENST00000432945 451 ntBASIC3.47□□□□□ -1.85
RNF40O75150 CST9LP2-201ENST00000437612 320 ntBASIC3.47□□□□□ -1.85
RNF40O75150 SNORD67.1-201ENST00000516618 108 ntBASIC3.47□□□□□ -1.85
RNF40O75150 RNA5SP168-201ENST00000516642 112 ntBASIC3.47□□□□□ -1.85
RNF40O75150 MIR8065-201ENST00000620577 100 ntBASIC3.47□□□□□ -1.85
RNF40O75150 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.47□□□□□ -1.85
RNF40O75150 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.47□□□□□ -1.85
RNF40O75150 RNU6-1321P-201ENST00000390905 107 ntBASIC3.46□□□□□ -1.86
RNF40O75150 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC3.46□□□□□ -1.86
RNF40O75150 MIR5004-201ENST00000579078 107 ntBASIC3.46□□□□□ -1.86
RNF40O75150 AL162274.2-201ENST00000614406 332 ntBASIC3.46□□□□□ -1.86
RNF40O75150 AC243994.1-201ENST00000618627 109 ntBASIC3.46□□□□□ -1.86
RNF40O75150 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF40O75150 AL365361.1-201ENST00000566942 3481 ntBASIC3.45□□□□□ -1.86
RNF40O75150 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF40O75150 Y_RNA.57-201ENST00000362806 113 ntBASIC3.45□□□□□ -1.86
RNF40O75150 RNU6-23P-201ENST00000363283 107 ntBASIC3.45□□□□□ -1.86
RNF40O75150 RNU6-624P-201ENST00000363411 107 ntBASIC3.45□□□□□ -1.86
RNF40O75150 CD24P4-201ENST00000382840 243 ntBASIC3.45□□□□□ -1.86
RNF40O75150 SNORA46-201ENST00000384762 135 ntBASIC3.45□□□□□ -1.86
RNF40O75150 MIR181B2-201ENST00000385004 89 ntBASIC3.45□□□□□ -1.86
RNF40O75150 MIR452-201ENST00000385020 85 ntBASIC3.45□□□□□ -1.86
RNF40O75150 TRAJ42-201ENST00000390495 66 ntAPPRIS P1 BASIC3.45□□□□□ -1.86
RNF40O75150 SNORA11.4-201ENST00000408823 129 ntBASIC3.45□□□□□ -1.86
RNF40O75150 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.45□□□□□ -1.86
RNF40O75150 UQCRHP3-201ENST00000451503 251 ntBASIC3.45□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms