Protein–RNA interactions for Protein: Q9Y3E7

CHMP3, Charged multivesicular body protein 3, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3Q9Y3E7 MIR26A1-201ENST00000362205 77 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 MIR522-201ENST00000385071 87 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 MIR561-201ENST00000385216 97 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 SNRPGP13-201ENST00000442212 177 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 AL031737.1-201ENST00000450125 223 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 TRBV12-1-201ENST00000479785 344 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 RNU1-142P-201ENST00000516682 145 ntBASIC3.37□□□□□ -1.87
CHMP3Q9Y3E7 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-106P-201ENST00000384405 107 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 MIR9-1-201ENST00000385198 89 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 RNA5SP323-201ENST00000391094 133 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 RN7SKP123-201ENST00000410732 291 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 AC003685.2-201ENST00000422795 395 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 RPS29P6-201ENST00000438196 145 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 AC007536.1-201ENST00000533382 349 ntBASIC3.36□□□□□ -1.87
CHMP3Q9Y3E7 SNORA25B-201ENST00000365507 128 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 SNORA8-201ENST00000384574 139 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 Y_RNA.549-201ENST00000384657 102 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-1072P-201ENST00000384703 107 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-443P-201ENST00000384780 107 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 MIR1262-201ENST00000408276 93 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 AC007064.1-201ENST00000412238 351 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 AL353149.1-201ENST00000610667 244 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 AL137067.1-201ENST00000615933 120 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 AC245060.5-201ENST00000610778 3293 ntBASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC3.35□□□□□ -1.87
CHMP3Q9Y3E7 ICE2P2-201ENST00000483823 2787 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 Z82195.2-201ENST00000612348 18351 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 TFEC-202ENST00000320239 6605 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-32P-201ENST00000383948 107 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-13P-201ENST00000384248 107 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-12P-201ENST00000384604 107 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-41P-201ENST00000384741 107 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 RNU6-554P-201ENST00000410466 106 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 ATP5J2P3-201ENST00000451550 258 ntBASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC3.34□□□□□ -1.87
CHMP3Q9Y3E7 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 SNORD68-201ENST00000363214 84 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 RNU6-461P-201ENST00000364195 107 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 U8.9-201ENST00000365667 134 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 MIR627-201ENST00000384979 97 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 MIR548O-201ENST00000408583 114 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 FTH1P12-201ENST00000432137 551 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 AL049830.1-201ENST00000468034 425 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 AL163195.1-201ENST00000496941 348 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 RNU6-240P-201ENST00000516098 97 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 AC091544.4-201ENST00000555268 342 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 AC007012.1-201ENST00000567192 175 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 MIR5582-201ENST00000579697 68 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 MIR5197-201ENST00000583721 112 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 MIR4635-201ENST00000583759 79 ntBASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CHMP3Q9Y3E7 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 RNU6-1107P-201ENST00000364817 104 ntBASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 AL358944.1-201ENST00000528537 144 ntBASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 MIR3605-201ENST00000583214 100 ntBASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 AC006254.2-201ENST00000603259 279 ntBASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 DLEU2_6.1-201ENST00000610536 112 ntBASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC3.32□□□□□ -1.88
CHMP3Q9Y3E7 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 RNU6-862P-201ENST00000362804 105 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 Y_RNA.99-201ENST00000363138 105 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 Y_RNA.281-201ENST00000364774 94 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 RNU11-5P-201ENST00000391216 129 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 RNA5SP344-201ENST00000411081 104 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 SRIP3-201ENST00000413200 219 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 AL606517.2-201ENST00000442855 241 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 SNORA9.3-201ENST00000516383 129 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 RNU7-25P-201ENST00000516544 62 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 AP002004.2-201ENST00000531656 154 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 AL035470.1-201ENST00000622571 220 ntBASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
CHMP3Q9Y3E7 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 RNU1-109P-201ENST00000383960 147 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 MIR570-201ENST00000384917 97 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 SNORD12C-201ENST00000386307 89 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 MIR802-201ENST00000390235 94 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 AL590004.2-201ENST00000404787 371 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 RNU6-113P-201ENST00000516653 101 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 MIR6733-201ENST00000635723 61 ntBASIC3.3□□□□□ -1.88
CHMP3Q9Y3E7 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 RNU6-160P-201ENST00000384591 107 ntBASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 Y_RNA.677-201ENST00000516401 85 ntBASIC3.29□□□□□ -1.88
CHMP3Q9Y3E7 RNA5SP148-201ENST00000516527 94 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms