Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 SNORA72-201ENST00000384339 132 ntBASIC2.03□□□□□ -2.08
TTC3P53804 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.03□□□□□ -2.08
TTC3P53804 RNU7-94P-201ENST00000459576 63 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AC092991.1-201ENST00000477176 376 ntBASIC2.03□□□□□ -2.08
TTC3P53804 RPL23AP63-201ENST00000498752 471 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AC010598.1-201ENST00000510378 103 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AC011406.1-201ENST00000512440 370 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AC011604.1-201ENST00000545978 196 ntBASIC2.03□□□□□ -2.08
TTC3P53804 PRELID2P1-201ENST00000552837 301 ntBASIC2.03□□□□□ -2.08
TTC3P53804 MIR3117-201ENST00000584034 78 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AC002984.1-201ENST00000591692 448 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AL021707.8-201ENST00000609428 183 ntBASIC2.03□□□□□ -2.08
TTC3P53804 MIR8070-201ENST00000616510 88 ntBASIC2.03□□□□□ -2.08
TTC3P53804 uc_338.4-201ENST00000616635 176 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AP000553.5-201ENST00000641933 54 ntBASIC2.03□□□□□ -2.08
TTC3P53804 AC010332.2-201ENST00000613083 1904 ntBASIC2.03□□□□□ -2.08
TTC3P53804 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC2.03□□□□□ -2.09
TTC3P53804 Y_RNA.634-201ENST00000364811 113 ntBASIC2.02□□□□□ -2.09
TTC3P53804 RNU6-969P-201ENST00000383900 105 ntBASIC2.02□□□□□ -2.09
TTC3P53804 Y_RNA.542-201ENST00000384641 111 ntBASIC2.02□□□□□ -2.09
TTC3P53804 RNU6-1228P-201ENST00000391014 107 ntBASIC2.02□□□□□ -2.09
TTC3P53804 RNU6-588P-201ENST00000410281 105 ntBASIC2.02□□□□□ -2.09
TTC3P53804 RNU6-1186P-201ENST00000410429 97 ntBASIC2.02□□□□□ -2.09
TTC3P53804 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.02□□□□□ -2.09
TTC3P53804 SNORD11-201ENST00000459124 84 ntBASIC2.02□□□□□ -2.09
TTC3P53804 AC079804.2-201ENST00000490376 200 ntBASIC2.02□□□□□ -2.09
TTC3P53804 RNA5SP490-201ENST00000517141 136 ntBASIC2.02□□□□□ -2.09
TTC3P53804 MIR3683-201ENST00000580847 82 ntBASIC2.02□□□□□ -2.09
TTC3P53804 JPX_2.1-201ENST00000614161 69 ntBASIC2.02□□□□□ -2.09
TTC3P53804 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC2.02□□□□□ -2.09
TTC3P53804 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.02□□□□□ -2.09
TTC3P53804 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
TTC3P53804 Y_RNA.215-201ENST00000364204 112 ntBASIC2.01□□□□□ -2.09
TTC3P53804 AL512604.1-201ENST00000404812 257 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU4-43P-201ENST00000410628 137 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU2-63P-201ENST00000410792 194 ntBASIC2.01□□□□□ -2.09
TTC3P53804 SRIP3-201ENST00000413200 219 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU6-1211P-201ENST00000459179 105 ntBASIC2.01□□□□□ -2.09
TTC3P53804 AL353149.1-201ENST00000610667 244 ntBASIC2.01□□□□□ -2.09
TTC3P53804 MIR203B-201ENST00000636080 86 ntBASIC2.01□□□□□ -2.09
TTC3P53804 MIR3658-201ENST00000636291 56 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU6-862P-201ENST00000362804 105 ntBASIC2.01□□□□□ -2.09
TTC3P53804 U8.1-201ENST00000362843 134 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNA5SP393-201ENST00000363423 117 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU4-13P-201ENST00000364019 141 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNA5SP138-201ENST00000365098 114 ntBASIC2.01□□□□□ -2.09
TTC3P53804 SNORA22C-201ENST00000384614 134 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU11-5P-201ENST00000391216 129 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNA5SP496-201ENST00000391240 109 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU6-257P-201ENST00000410238 98 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU6-321P-201ENST00000410912 106 ntBASIC2.01□□□□□ -2.09
TTC3P53804 AC107027.2-201ENST00000512197 115 ntBASIC2.01□□□□□ -2.09
TTC3P53804 RNU6-63P-201ENST00000516690 95 ntBASIC2.01□□□□□ -2.09
TTC3P53804 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.01□□□□□ -2.09
TTC3P53804 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.01□□□□□ -2.09
TTC3P53804 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC2□□□□□ -2.09
TTC3P53804 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2□□□□□ -2.09
TTC3P53804 MIR378A-201ENST00000362177 66 ntBASIC2□□□□□ -2.09
TTC3P53804 Y_RNA.71-201ENST00000362892 104 ntBASIC2□□□□□ -2.09
TTC3P53804 MIR873-201ENST00000401120 77 ntBASIC2□□□□□ -2.09
TTC3P53804 MIR1253-201ENST00000408273 105 ntBASIC2□□□□□ -2.09
TTC3P53804 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2□□□□□ -2.09
TTC3P53804 HMGN2P34-201ENST00000437647 269 ntBASIC2□□□□□ -2.09
TTC3P53804 AC010409.1-201ENST00000487382 476 ntBASIC2□□□□□ -2.09
TTC3P53804 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2□□□□□ -2.09
TTC3P53804 RNU1-23P-201ENST00000363361 144 ntBASIC2□□□□□ -2.09
TTC3P53804 RNU6-1325P-201ENST00000364905 105 ntBASIC2□□□□□ -2.09
TTC3P53804 SNORA40-201ENST00000388090 126 ntBASIC2□□□□□ -2.09
TTC3P53804 RNA5SP338-201ENST00000410495 85 ntBASIC2□□□□□ -2.09
TTC3P53804 MTND4LP9-201ENST00000427694 174 ntBASIC2□□□□□ -2.09
TTC3P53804 UBBP3-201ENST00000445497 241 ntBASIC2□□□□□ -2.09
TTC3P53804 SNORD116-25-201ENST00000516517 92 ntBASIC2□□□□□ -2.09
TTC3P53804 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2□□□□□ -2.09
TTC3P53804 AL359075.3-201ENST00000613288 217 ntBASIC2□□□□□ -2.09
TTC3P53804 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC1.99□□□□□ -2.09
TTC3P53804 AC018630.2-201ENST00000534866 2403 ntBASIC1.99□□□□□ -2.09
TTC3P53804 AC100821.1-201ENST00000523153 2479 ntBASIC1.99□□□□□ -2.09
TTC3P53804 Y_RNA.796-201ENST00000364268 102 ntBASIC1.99□□□□□ -2.09
TTC3P53804 Y_RNA.226-201ENST00000364337 114 ntBASIC1.99□□□□□ -2.09
TTC3P53804 RNU4-41P-201ENST00000364426 143 ntBASIC1.99□□□□□ -2.09
TTC3P53804 Y_RNA.799-201ENST00000364992 102 ntBASIC1.99□□□□□ -2.09
TTC3P53804 RNA5SP190-201ENST00000365222 118 ntBASIC1.99□□□□□ -2.09
TTC3P53804 Y_RNA.393-201ENST00000383936 102 ntBASIC1.99□□□□□ -2.09
TTC3P53804 RNU6-1080P-201ENST00000383982 107 ntBASIC1.99□□□□□ -2.09
TTC3P53804 RNU6-1154P-201ENST00000391001 104 ntBASIC1.99□□□□□ -2.09
TTC3P53804 AC016909.1-201ENST00000415916 166 ntBASIC1.99□□□□□ -2.09
TTC3P53804 SNORA48.11-201ENST00000517015 89 ntBASIC1.99□□□□□ -2.09
TTC3P53804 RPL23AP91-201ENST00000569211 455 ntBASIC1.99□□□□□ -2.09
TTC3P53804 MIR4303-201ENST00000581299 66 ntBASIC1.99□□□□□ -2.09
TTC3P53804 MIR2681-201ENST00000581814 105 ntBASIC1.99□□□□□ -2.09
TTC3P53804 AL929325.1-201ENST00000603096 117 ntBASIC1.99□□□□□ -2.09
TTC3P53804 AC084768.2-201ENST00000622736 221 ntBASIC1.99□□□□□ -2.09
TTC3P53804 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC1.99□□□□□ -2.09
TTC3P53804 Y_RNA.337-201ENST00000365312 102 ntBASIC1.98□□□□□ -2.09
TTC3P53804 AC123900.1-201ENST00000420390 96 ntBASIC1.98□□□□□ -2.09
TTC3P53804 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.98□□□□□ -2.09
TTC3P53804 AC023449.1-201ENST00000454464 154 ntBASIC1.98□□□□□ -2.09
TTC3P53804 AC108729.3-201ENST00000513484 108 ntBASIC1.98□□□□□ -2.09
TTC3P53804 RNU6-250P-201ENST00000516958 103 ntBASIC1.98□□□□□ -2.09
TTC3P53804 RNU6-856P-201ENST00000516959 98 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 107.8 ms