Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.81■□□□□ 0.92
NOD1Q9Y239 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
NOD1Q9Y239 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 USP39-204ENST00000409766 2033 ntTSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 KRT8P3-201ENST00000519669 1449 ntBASIC20.8■□□□□ 0.92
NOD1Q9Y239 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 KRT8P26-201ENST00000534154 1276 ntBASIC20.8■□□□□ 0.92
NOD1Q9Y239 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 AP002414.4-201ENST00000589764 1148 ntBASIC20.8■□□□□ 0.92
NOD1Q9Y239 IL11-204ENST00000590625 1028 ntTSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 AL136038.4-201ENST00000603606 1261 ntBASIC20.8■□□□□ 0.92
NOD1Q9Y239 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 RPS6KB1-204ENST00000443572 1913 ntTSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
NOD1Q9Y239 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
NOD1Q9Y239 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 AL845331.1-201ENST00000424978 1190 ntBASIC20.79■□□□□ 0.92
NOD1Q9Y239 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.79■□□□□ 0.92
NOD1Q9Y239 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.79■□□□□ 0.92
NOD1Q9Y239 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NOD1Q9Y239 KRT18P1-202ENST00000452408 1331 ntBASIC20.78■□□□□ 0.92
NOD1Q9Y239 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 MIR3180-1-201ENST00000580374 94 ntBASIC20.78■□□□□ 0.92
NOD1Q9Y239 MIR3917-201ENST00000580971 93 ntBASIC20.78■□□□□ 0.92
NOD1Q9Y239 MIR3180-3-201ENST00000584616 94 ntBASIC20.78■□□□□ 0.92
NOD1Q9Y239 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC20.78■□□□□ 0.92
NOD1Q9Y239 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 AC093525.10-201ENST00000625130 1569 ntBASIC20.77■□□□□ 0.92
NOD1Q9Y239 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
NOD1Q9Y239 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NOD1Q9Y239 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
NOD1Q9Y239 TSPY22P-201ENST00000427496 604 ntBASIC20.77■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms