Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 FEM1AP3-201ENST00000403722 1741 ntBASIC19.45■□□□□ 0.7
TDP1Q9NUW8 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TDP1Q9NUW8 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 ATP5G2P1-201ENST00000433580 426 ntBASIC19.44■□□□□ 0.7
TDP1Q9NUW8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
TDP1Q9NUW8 HAUS4-218ENST00000555986 1626 ntTSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 RPRM-201ENST00000325926 1471 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 AC008556.1-201ENST00000610908 2040 ntBASIC19.43■□□□□ 0.7
TDP1Q9NUW8 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 DUSP5P1-201ENST00000441325 1139 ntBASIC19.43■□□□□ 0.7
TDP1Q9NUW8 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 AL157888.1-201ENST00000631930 593 ntBASIC19.43■□□□□ 0.7
TDP1Q9NUW8 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TDP1Q9NUW8 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 MIR3917-201ENST00000580971 93 ntBASIC19.42■□□□□ 0.7
TDP1Q9NUW8 ANKRD36-207ENST00000639293 1168 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TDP1Q9NUW8 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 58.8 ms