Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 FEM1AP3-201ENST00000403722 1741 ntBASIC21.13■□□□□ 0.97
VTA1Q9NP79 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 AP002383.4-201ENST00000442518 975 ntBASIC21.13■□□□□ 0.97
VTA1Q9NP79 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 PRR29-207ENST00000580752 458 ntTSL 3 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.13■□□□□ 0.97
VTA1Q9NP79 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VTA1Q9NP79 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.12■□□□□ 0.97
VTA1Q9NP79 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VTA1Q9NP79 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 AC026396.1-201ENST00000419388 421 ntBASIC21.12■□□□□ 0.97
VTA1Q9NP79 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC21.12■□□□□ 0.97
VTA1Q9NP79 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC21.12■□□□□ 0.97
VTA1Q9NP79 AC010240.3-201ENST00000607688 395 ntBASIC21.12■□□□□ 0.97
VTA1Q9NP79 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 CCK-202ENST00000396169 1527 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
VTA1Q9NP79 KRT8P32-201ENST00000512863 1461 ntBASIC21.12■□□□□ 0.97
VTA1Q9NP79 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
VTA1Q9NP79 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VTA1Q9NP79 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 AP5S1-203ENST00000379573 1848 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 MIR564-202ENST00000385049 94 ntBASIC21.11■□□□□ 0.97
VTA1Q9NP79 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 ELP6-205ENST00000439305 880 ntTSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 PRELID1P1-202ENST00000567272 903 ntBASIC21.11■□□□□ 0.97
VTA1Q9NP79 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 AC125437.2-201ENST00000625180 2167 ntBASIC21.11■□□□□ 0.97
VTA1Q9NP79 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VTA1Q9NP79 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
VTA1Q9NP79 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 CHCHD2P8-201ENST00000429873 447 ntBASIC21.1■□□□□ 0.97
VTA1Q9NP79 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VTA1Q9NP79 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC21.1■□□□□ 0.97
VTA1Q9NP79 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
VTA1Q9NP79 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC21.09■□□□□ 0.97
VTA1Q9NP79 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms