Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 C1QC-201ENST00000374637 1089 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 AC236430.1-201ENST00000402231 743 ntBASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 KIRREL3-AS3-201ENST00000404882 831 ntBASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 GALT-202ENST00000450095 1280 ntTSL 2 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 RNA5SP421-201ENST00000516864 134 ntBASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
COL25A1Q9BXS0 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 HLA-DRB6-201ENST00000411500 1235 ntBASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 ANO1-202ENST00000355303 4790 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
COL25A1Q9BXS0 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 AL353692.3-201ENST00000407031 1396 ntBASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 CD1E-211ENST00000368166 1271 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 AC092865.6-201ENST00000642101 219 ntBASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
COL25A1Q9BXS0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 CSF3-206ENST00000577675 1360 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 OARD1-208ENST00000469104 704 ntTSL 2 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 PARP8-206ENST00000503665 572 ntTSL 4 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 TEN1-204ENST00000588202 862 ntTSL 3 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 LINC00634-201ENST00000381348 1510 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
COL25A1Q9BXS0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 AC002472.2-201ENST00000442739 958 ntBASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 CCND1-203ENST00000536559 553 ntTSL 3 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 AQP6-203ENST00000551733 849 ntTSL 3 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC19.09■□□□□ 0.65
COL25A1Q9BXS0 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC19.08■□□□□ 0.65
COL25A1Q9BXS0 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms