Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 PLPP4-202ENST00000398250 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
PAAF1Q9BRP4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 CD19-206ENST00000567541 1707 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 HBZP1-201ENST00000354915 429 ntBASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 FXYD7-203ENST00000586063 456 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 KATNBL1P6-202ENST00000562413 1466 ntBASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 NCF1B-201ENST00000423083 1516 ntTSL 2 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
PAAF1Q9BRP4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
PAAF1Q9BRP4 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
PAAF1Q9BRP4 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.14■□□□□ 0.82
PAAF1Q9BRP4 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PAAF1Q9BRP4 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PAAF1Q9BRP4 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 AL109659.2-201ENST00000606809 1674 ntBASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 AC079602.3-201ENST00000623931 403 ntBASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 FP475955.4-201ENST00000623131 1990 ntBASIC20.14■□□□□ 0.81
PAAF1Q9BRP4 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 ACSF3-202ENST00000378345 1541 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 CLN6-214ENST00000636314 442 ntTSL 3 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PAAF1Q9BRP4 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 FAM187B-201ENST00000324675 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
PAAF1Q9BRP4 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms