Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 AC098818.2-201ENST00000564925 2320 ntBASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.81■□□□□ 0.44
PTCHD1Q96NR3 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 AC007663.1-201ENST00000438948 1240 ntBASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 CRYZL1-203ENST00000381540 1482 ntTSL 2 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 AC092338.2-201ENST00000568827 1415 ntBASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 AP000974.1-201ENST00000623909 2387 ntBASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 RPP25-201ENST00000322177 3049 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
PTCHD1Q96NR3 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 FP475955.4-201ENST00000623131 1990 ntBASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 AC018445.3-201ENST00000624177 1945 ntBASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 AC010653.2-201ENST00000623505 997 ntBASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
PTCHD1Q96NR3 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 SLC25A3P1-201ENST00000443844 931 ntBASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 PDZD3-203ENST00000525131 1882 ntTSL 2 BASIC17.78■□□□□ 0.44
PTCHD1Q96NR3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
PTCHD1Q96NR3 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms