Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 SLC29A4P1-201ENST00000398760 971 ntBASIC18.16■□□□□ 0.5
VPS33AQ96AX1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 AC097658.1-201ENST00000475555 843 ntBASIC18.16■□□□□ 0.5
VPS33AQ96AX1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 NOC2LP1-202ENST00000452600 2235 ntBASIC18.16■□□□□ 0.5
VPS33AQ96AX1 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
VPS33AQ96AX1 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 COBL-210ENST00000632460 1941 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 PCDHB18P-201ENST00000524813 2368 ntBASIC18.15■□□□□ 0.5
VPS33AQ96AX1 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 TSPY6P-201ENST00000448518 926 ntBASIC18.15■□□□□ 0.5
VPS33AQ96AX1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.15■□□□□ 0.5
VPS33AQ96AX1 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 AL121829.2-201ENST00000620908 328 ntBASIC18.15■□□□□ 0.5
VPS33AQ96AX1 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 PLA2G2F-201ENST00000375102 2723 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 NAF1-202ENST00000422287 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 KCNQ2-218ENST00000629676 2399 ntTSL 5 BASIC18.15■□□□□ 0.5
VPS33AQ96AX1 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC18.14■□□□□ 0.5
VPS33AQ96AX1 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.14■□□□□ 0.5
VPS33AQ96AX1 LTB4R2-202ENST00000528054 3092 ntBASIC18.14■□□□□ 0.5
VPS33AQ96AX1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS33AQ96AX1 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS33AQ96AX1 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
VPS33AQ96AX1 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 NKD2-201ENST00000274150 1940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.14■□□□□ 0.49
VPS33AQ96AX1 AC098934.4-201ENST00000564127 592 ntBASIC18.14■□□□□ 0.49
VPS33AQ96AX1 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 MIR4758-201ENST00000577688 71 ntBASIC18.14■□□□□ 0.49
VPS33AQ96AX1 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 AC060766.5-201ENST00000590539 871 ntBASIC18.14■□□□□ 0.49
VPS33AQ96AX1 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC18.14■□□□□ 0.49
VPS33AQ96AX1 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms