Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC22.41■■□□□ 1.18
SMC1BQ8NDV3 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 MCCD1P1-208ENST00000445732 328 ntBASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 CD63-204ENST00000546939 779 ntTSL 3 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 AC040169.1-201ENST00000565382 521 ntBASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 MIR5100-201ENST00000579544 119 ntBASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC22.4■■□□□ 1.18
SMC1BQ8NDV3 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.18
SMC1BQ8NDV3 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC22.39■■□□□ 1.18
SMC1BQ8NDV3 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC22.39■■□□□ 1.18
SMC1BQ8NDV3 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC22.39■■□□□ 1.18
SMC1BQ8NDV3 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.18
SMC1BQ8NDV3 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC22.39■■□□□ 1.18
SMC1BQ8NDV3 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 KRT18P23-201ENST00000435622 1283 ntBASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 IGHV3-22-201ENST00000520721 359 ntBASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 LINC01714-202ENST00000635451 896 ntTSL 5 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC22.39■■□□□ 1.17
SMC1BQ8NDV3 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 MFSD1-201ENST00000264266 1594 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 CALY-203ENST00000368558 825 ntTSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 HNRNPDP1-201ENST00000439535 754 ntBASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 RFPL4AP1-201ENST00000530883 850 ntBASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 FP700111.2-201ENST00000619190 1892 ntBASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 AL024507.2-201ENST00000606070 2574 ntBASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC22.38■■□□□ 1.17
SMC1BQ8NDV3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 PRSS33-201ENST00000293851 1694 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 AL035633.1-201ENST00000406139 838 ntBASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 KRT18P3-201ENST00000451602 1288 ntBASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 AC091607.1-201ENST00000490318 1060 ntBASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
SMC1BQ8NDV3 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC22.37■■□□□ 1.17
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms