Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 AC093525.10-201ENST00000625130 1569 ntBASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
NPAS3Q8IXF0 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 SPAG16-207ENST00000432529 1250 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 AL445472.1-201ENST00000452532 1007 ntTSL 2 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 AC013402.1-201ENST00000456999 561 ntTSL 4 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 C5orf49-202ENST00000509627 1020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 KRT8P26-201ENST00000534154 1276 ntBASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 MIR3917-201ENST00000580971 93 ntBASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 AP002414.4-201ENST00000589764 1148 ntBASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 AL136038.4-201ENST00000603606 1261 ntBASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
NPAS3Q8IXF0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 AC111152.3-201ENST00000569699 673 ntBASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC19.54■□□□□ 0.72
NPAS3Q8IXF0 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 SRP9-203ENST00000366839 1596 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 AC112907.3-201ENST00000577781 2400 ntBASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 AL732314.6-201ENST00000627721 484 ntTSL 4 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
NPAS3Q8IXF0 AL391807.1-203ENST00000604392 2365 ntBASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 HEXIM2-201ENST00000307275 1528 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 MIR662-201ENST00000384847 95 ntBASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 CHCHD2P8-201ENST00000429873 447 ntBASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 NAA38-203ENST00000575071 553 ntTSL 2 BASIC19.52■□□□□ 0.72
NPAS3Q8IXF0 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms