Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 AC233702.3-201ENST00000578656 1387 ntBASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 AC027796.2-201ENST00000575326 344 ntBASIC13.13□□□□□ -0.31
CSMD3Q7Z407 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 NMU-202ENST00000505262 693 ntTSL 3 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 SEC23A-206ENST00000553970 574 ntTSL 4 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 AL162497.1-201ENST00000615635 518 ntTSL 4 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 AC139887.3-201ENST00000568585 713 ntBASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
CSMD3Q7Z407 ANKRD18DP-204ENST00000455355 1975 ntBASIC13.13□□□□□ -0.31
CSMD3Q7Z407 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 NSUN5P1-202ENST00000421140 1535 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 NSUN5P2-203ENST00000457352 1529 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MED22-202ENST00000371999 987 ntTSL 3 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 AC148477.8-201ENST00000624298 468 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 AL031284.1-201ENST00000419297 478 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 KRT18P23-201ENST00000435622 1283 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 AC005332.3-201ENST00000589904 676 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 FAM220CP-201ENST00000395253 831 ntBASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
CSMD3Q7Z407 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 EMD-201ENST00000369835 966 ntTSL 3 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC13.11□□□□□ -0.31
CSMD3Q7Z407 AC106730.1-201ENST00000566722 1090 ntBASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms