Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC11.71□□□□□ -0.54
HSPG2P98160 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC11.7□□□□□ -0.54
HSPG2P98160 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC11.7□□□□□ -0.54
HSPG2P98160 WDR53-203ENST00000429115 683 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 AC007225.1-201ENST00000566331 1836 ntBASIC11.7□□□□□ -0.54
HSPG2P98160 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC11.7□□□□□ -0.54
HSPG2P98160 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC11.7□□□□□ -0.54
HSPG2P98160 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 TH-202ENST00000333684 1535 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC11.7□□□□□ -0.54
HSPG2P98160 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 IRF8-202ENST00000562492 946 ntTSL 3 BASIC11.7□□□□□ -0.54
HSPG2P98160 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 AC010240.3-201ENST00000607688 395 ntBASIC11.7□□□□□ -0.54
HSPG2P98160 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 FBXW4P1-201ENST00000426721 2239 ntBASIC11.7□□□□□ -0.54
HSPG2P98160 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC11.7□□□□□ -0.54
HSPG2P98160 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC11.7□□□□□ -0.54
HSPG2P98160 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC11.7□□□□□ -0.54
HSPG2P98160 MCCD1P1-208ENST00000445732 328 ntBASIC11.7□□□□□ -0.54
HSPG2P98160 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC11.7□□□□□ -0.54
HSPG2P98160 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 AC233723.2-201ENST00000623798 2106 ntBASIC11.69□□□□□ -0.54
HSPG2P98160 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC11.69□□□□□ -0.54
HSPG2P98160 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC11.69□□□□□ -0.54
HSPG2P98160 MINOS1P3-201ENST00000457048 203 ntBASIC11.69□□□□□ -0.54
HSPG2P98160 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC11.69□□□□□ -0.54
HSPG2P98160 AC012645.4-201ENST00000610691 1061 ntBASIC11.69□□□□□ -0.54
HSPG2P98160 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC11.69□□□□□ -0.54
HSPG2P98160 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC11.69□□□□□ -0.54
HSPG2P98160 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC11.69□□□□□ -0.54
HSPG2P98160 AC124864.1-201ENST00000623408 392 ntBASIC11.69□□□□□ -0.54
HSPG2P98160 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC11.69□□□□□ -0.54
HSPG2P98160 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
HSPG2P98160 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
HSPG2P98160 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
HSPG2P98160 TCF20-203ENST00000404876 1058 ntTSL 3 BASIC11.69□□□□□ -0.54
HSPG2P98160 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC11.69□□□□□ -0.54
HSPG2P98160 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC11.69□□□□□ -0.54
HSPG2P98160 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC11.69□□□□□ -0.54
HSPG2P98160 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC11.69□□□□□ -0.54
HSPG2P98160 PCCB-216ENST00000483687 1727 ntTSL 3 BASIC11.69□□□□□ -0.54
HSPG2P98160 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC11.69□□□□□ -0.54
HSPG2P98160 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
HSPG2P98160 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC11.68□□□□□ -0.54
HSPG2P98160 AC004832.2-201ENST00000426397 482 ntBASIC11.68□□□□□ -0.54
HSPG2P98160 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC11.68□□□□□ -0.54
HSPG2P98160 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
HSPG2P98160 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC11.68□□□□□ -0.54
HSPG2P98160 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
HSPG2P98160 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC11.68□□□□□ -0.54
HSPG2P98160 COX20P2-201ENST00000452636 358 ntBASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms