Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA3P55318 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA3P55318 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
FOXA3P55318 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC14.19□□□□□ -0.14
FOXA3P55318 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC14.19□□□□□ -0.14
FOXA3P55318 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 BRWD1-AS2-201ENST00000603064 1028 ntBASIC14.19□□□□□ -0.14
FOXA3P55318 AC105020.6-201ENST00000621523 1217 ntBASIC14.19□□□□□ -0.14
FOXA3P55318 AC083906.6-201ENST00000641366 219 ntBASIC14.19□□□□□ -0.14
FOXA3P55318 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
FOXA3P55318 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC14.19□□□□□ -0.14
FOXA3P55318 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC14.19□□□□□ -0.14
FOXA3P55318 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.19□□□□□ -0.14
FOXA3P55318 ZCCHC17-205ENST00000615916 1652 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC14.19□□□□□ -0.14
FOXA3P55318 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC14.19□□□□□ -0.14
FOXA3P55318 AC104417.2-201ENST00000562989 1793 ntBASIC14.19□□□□□ -0.14
FOXA3P55318 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC14.19□□□□□ -0.14
FOXA3P55318 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.19□□□□□ -0.14
FOXA3P55318 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC14.19□□□□□ -0.14
FOXA3P55318 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
FOXA3P55318 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA3P55318 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC14.18□□□□□ -0.14
FOXA3P55318 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA3P55318 STOX2-205ENST00000513034 807 ntTSL 3 BASIC14.18□□□□□ -0.14
FOXA3P55318 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC14.18□□□□□ -0.14
FOXA3P55318 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA3P55318 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 ESPNP-201ENST00000270691 2015 ntBASIC14.18□□□□□ -0.14
FOXA3P55318 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC14.18□□□□□ -0.14
FOXA3P55318 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 OR6D1P-203ENST00000641209 4860 ntBASIC14.18□□□□□ -0.14
FOXA3P55318 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC14.18□□□□□ -0.14
FOXA3P55318 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC14.18□□□□□ -0.14
FOXA3P55318 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC14.17□□□□□ -0.14
FOXA3P55318 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
FOXA3P55318 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 ANKRD18DP-204ENST00000455355 1975 ntBASIC14.17□□□□□ -0.14
FOXA3P55318 TERF1P5-201ENST00000477545 1207 ntBASIC14.17□□□□□ -0.14
FOXA3P55318 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC14.17□□□□□ -0.14
FOXA3P55318 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 FST-202ENST00000396947 2538 ntTSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 GCK-205ENST00000437084 1385 ntTSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
FOXA3P55318 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC14.17□□□□□ -0.14
FOXA3P55318 COBL-210ENST00000632460 1941 ntTSL 5 BASIC14.17□□□□□ -0.14
FOXA3P55318 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms