Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 NUS1P1-201ENST00000446295 882 ntBASIC20.22■□□□□ 0.83
COL4A4P53420 AC079848.1-202ENST00000507924 444 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A4P53420 AP000867.3-201ENST00000524675 377 ntBASIC20.22■□□□□ 0.83
COL4A4P53420 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 AKR1C7P-201ENST00000305623 895 ntBASIC20.22■□□□□ 0.83
COL4A4P53420 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL4A4P53420 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL4A4P53420 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC20.22■□□□□ 0.83
COL4A4P53420 KRT18P31-201ENST00000506277 1292 ntBASIC20.22■□□□□ 0.83
COL4A4P53420 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
COL4A4P53420 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 UBC-206ENST00000538617 1303 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
COL4A4P53420 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.22■□□□□ 0.83
COL4A4P53420 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC20.22■□□□□ 0.83
COL4A4P53420 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A4P53420 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL4A4P53420 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 AL158211.5-201ENST00000623583 2518 ntBASIC20.21■□□□□ 0.83
COL4A4P53420 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL4A4P53420 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A4P53420 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.21■□□□□ 0.83
COL4A4P53420 FOSL1P1-201ENST00000511041 816 ntBASIC20.21■□□□□ 0.83
COL4A4P53420 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A4P53420 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.21■□□□□ 0.83
COL4A4P53420 AL662844.1-201ENST00000546340 181 ntBASIC20.21■□□□□ 0.83
COL4A4P53420 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 RNF126P1-202ENST00000569893 925 ntBASIC20.21■□□□□ 0.83
COL4A4P53420 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A4P53420 AL136038.4-201ENST00000603606 1261 ntBASIC20.21■□□□□ 0.83
COL4A4P53420 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.21■□□□□ 0.83
COL4A4P53420 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL4A4P53420 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.21■□□□□ 0.83
COL4A4P53420 AFG3L1P-217ENST00000557444 2447 ntBASIC20.2■□□□□ 0.82
COL4A4P53420 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 TSPY22P-201ENST00000427496 604 ntBASIC20.2■□□□□ 0.82
COL4A4P53420 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.2■□□□□ 0.82
COL4A4P53420 KRT16P4-201ENST00000453883 522 ntBASIC20.2■□□□□ 0.82
COL4A4P53420 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A4P53420 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A4P53420 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 AC024243.1-201ENST00000609234 778 ntBASIC20.2■□□□□ 0.82
COL4A4P53420 AC139530.3-201ENST00000620344 690 ntBASIC20.2■□□□□ 0.82
COL4A4P53420 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.2■□□□□ 0.82
COL4A4P53420 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.2■□□□□ 0.82
COL4A4P53420 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.2■□□□□ 0.82
COL4A4P53420 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.2■□□□□ 0.82
COL4A4P53420 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL4A4P53420 AC104819.1-201ENST00000504587 486 ntBASIC20.19■□□□□ 0.82
COL4A4P53420 AC079776.4-201ENST00000511039 504 ntBASIC20.19■□□□□ 0.82
COL4A4P53420 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.19■□□□□ 0.82
COL4A4P53420 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL4A4P53420 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.19■□□□□ 0.82
COL4A4P53420 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL4A4P53420 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms