Protein–RNA interactions for Protein: P51800

CLCNKA, Chloride channel protein ClC-Ka, humanhuman

Predictions only

Length 687 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKAP51800 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC18.52■□□□□ 0.56
CLCNKAP51800 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC18.52■□□□□ 0.56
CLCNKAP51800 AC104076.2-201ENST00000448912 469 ntBASIC18.52■□□□□ 0.56
CLCNKAP51800 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
CLCNKAP51800 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCNKAP51800 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC18.52■□□□□ 0.56
CLCNKAP51800 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCNKAP51800 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
CLCNKAP51800 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
CLCNKAP51800 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
CLCNKAP51800 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.52■□□□□ 0.55
CLCNKAP51800 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.52■□□□□ 0.55
CLCNKAP51800 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.52■□□□□ 0.55
CLCNKAP51800 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.51■□□□□ 0.55
CLCNKAP51800 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.51■□□□□ 0.55
CLCNKAP51800 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC18.51■□□□□ 0.55
CLCNKAP51800 AP001922.1-201ENST00000499390 1504 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCNKAP51800 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.51■□□□□ 0.55
CLCNKAP51800 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCNKAP51800 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC18.51■□□□□ 0.55
CLCNKAP51800 AC010331.1-201ENST00000611423 582 ntBASIC18.51■□□□□ 0.55
CLCNKAP51800 AC008622.2-201ENST00000617006 1229 ntBASIC18.51■□□□□ 0.55
CLCNKAP51800 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC18.51■□□□□ 0.55
CLCNKAP51800 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
CLCNKAP51800 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CLCNKAP51800 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CLCNKAP51800 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCNKAP51800 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC18.5■□□□□ 0.55
CLCNKAP51800 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC18.5■□□□□ 0.55
CLCNKAP51800 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.5■□□□□ 0.55
CLCNKAP51800 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.5■□□□□ 0.55
CLCNKAP51800 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.5■□□□□ 0.55
CLCNKAP51800 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 WWOX-216ENST00000569818 525 ntBASIC18.5■□□□□ 0.55
CLCNKAP51800 AC006011.2-201ENST00000621313 1158 ntBASIC18.5■□□□□ 0.55
CLCNKAP51800 MARK4-211ENST00000622871 1147 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 AL031432.5-201ENST00000641059 760 ntBASIC18.5■□□□□ 0.55
CLCNKAP51800 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CLCNKAP51800 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CLCNKAP51800 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 PTGES2-214ENST00000617202 1344 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 KRT8P45-201ENST00000414328 1447 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 AC120498.9-201ENST00000339021 3867 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 DUX4L26-201ENST00000489078 1255 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
CLCNKAP51800 AL049597.2-201ENST00000565575 961 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 NEK4P2-201ENST00000580004 1012 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 MIR4674-201ENST00000582457 87 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC18.49■□□□□ 0.55
CLCNKAP51800 AL590326.2-201ENST00000625139 305 ntBASIC18.49■□□□□ 0.55
CLCNKAP51800 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 TMEM91-210ENST00000542945 1610 ntTSL 2 BASIC18.49■□□□□ 0.55
CLCNKAP51800 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
CLCNKAP51800 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CLCNKAP51800 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CLCNKAP51800 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.48■□□□□ 0.55
CLCNKAP51800 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCNKAP51800 PDLIM3-202ENST00000284770 1766 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCNKAP51800 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CLCNKAP51800 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC18.48■□□□□ 0.55
CLCNKAP51800 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCNKAP51800 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CLCNKAP51800 COX11P1-201ENST00000489116 835 ntBASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms