Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 NSUN5P1-202ENST00000421140 1535 ntBASIC31.66■■■□□ 2.66
CUX1P39880 NSUN5P2-203ENST00000457352 1529 ntBASIC31.66■■■□□ 2.66
CUX1P39880 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC31.65■■■□□ 2.66
CUX1P39880 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 BX640515.1-201ENST00000617215 977 ntBASIC31.65■■■□□ 2.66
CUX1P39880 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC31.65■■■□□ 2.66
CUX1P39880 TEX30-205ENST00000376029 959 ntTSL 2 BASIC31.65■■■□□ 2.66
CUX1P39880 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
CUX1P39880 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
CUX1P39880 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
CUX1P39880 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC31.65■■■□□ 2.66
CUX1P39880 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC31.65■■■□□ 2.66
CUX1P39880 NME4-212ENST00000621774 904 ntTSL 3 BASIC31.65■■■□□ 2.66
CUX1P39880 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CUX1P39880 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC31.64■■■□□ 2.66
CUX1P39880 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CUX1P39880 CHTOP-207ENST00000614256 1840 ntTSL 3 BASIC31.64■■■□□ 2.66
CUX1P39880 KATNBL1P6-202ENST00000562413 1466 ntBASIC31.64■■■□□ 2.66
CUX1P39880 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
CUX1P39880 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CUX1P39880 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CUX1P39880 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
CUX1P39880 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
CUX1P39880 AP000593.1-201ENST00000393668 712 ntBASIC31.64■■■□□ 2.66
CUX1P39880 MOBP-204ENST00000420739 940 ntAPPRIS P4 TSL 5 BASIC31.64■■■□□ 2.66
CUX1P39880 AF238378.1-201ENST00000526806 358 ntBASIC31.64■■■□□ 2.66
CUX1P39880 Z69720.1-201ENST00000601483 472 ntBASIC31.64■■■□□ 2.66
CUX1P39880 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC31.64■■■□□ 2.65
CUX1P39880 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC31.63■■■□□ 2.65
CUX1P39880 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC31.63■■■□□ 2.65
CUX1P39880 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC31.63■■■□□ 2.65
CUX1P39880 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 SLC25A1P1-201ENST00000528351 927 ntBASIC31.63■■■□□ 2.65
CUX1P39880 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC31.63■■■□□ 2.65
CUX1P39880 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC31.63■■■□□ 2.65
CUX1P39880 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CUX1P39880 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC31.63■■■□□ 2.65
CUX1P39880 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC31.62■■■□□ 2.65
CUX1P39880 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CUX1P39880 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CUX1P39880 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC31.62■■■□□ 2.65
CUX1P39880 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
CUX1P39880 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC31.62■■■□□ 2.65
CUX1P39880 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC31.62■■■□□ 2.65
CUX1P39880 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC31.62■■■□□ 2.65
CUX1P39880 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC31.62■■■□□ 2.65
CUX1P39880 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC31.62■■■□□ 2.65
CUX1P39880 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC31.62■■■□□ 2.65
CUX1P39880 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
CUX1P39880 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC31.62■■■□□ 2.65
CUX1P39880 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC31.62■■■□□ 2.65
CUX1P39880 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
CUX1P39880 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC31.61■■■□□ 2.65
CUX1P39880 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
CUX1P39880 LSM5-204ENST00000409909 740 ntTSL 2 BASIC31.61■■■□□ 2.65
CUX1P39880 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CUX1P39880 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC31.61■■■□□ 2.65
CUX1P39880 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CUX1P39880 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC31.61■■■□□ 2.65
CUX1P39880 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC31.6■■■□□ 2.65
CUX1P39880 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC31.6■■■□□ 2.65
CUX1P39880 PTX4-202ENST00000440447 1117 ntTSL 5 BASIC31.6■■■□□ 2.65
CUX1P39880 AC079776.4-201ENST00000511039 504 ntBASIC31.6■■■□□ 2.65
CUX1P39880 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
CUX1P39880 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC31.6■■■□□ 2.65
CUX1P39880 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC31.6■■■□□ 2.65
CUX1P39880 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC31.6■■■□□ 2.65
CUX1P39880 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC31.6■■■□□ 2.65
CUX1P39880 KCNIP4-205ENST00000382152 1767 ntTSL 5 BASIC31.6■■■□□ 2.65
CUX1P39880 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC31.6■■■□□ 2.65
CUX1P39880 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
CUX1P39880 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CUX1P39880 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC31.6■■■□□ 2.65
CUX1P39880 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CUX1P39880 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CUX1P39880 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC31.6■■■□□ 2.65
CUX1P39880 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC31.6■■■□□ 2.65
CUX1P39880 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 DFFB-203ENST00000341385 572 ntTSL 5 BASIC31.59■■■□□ 2.65
CUX1P39880 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
CUX1P39880 NUS1P2-201ENST00000417358 873 ntBASIC31.59■■■□□ 2.65
CUX1P39880 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC31.59■■■□□ 2.65
CUX1P39880 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC31.59■■■□□ 2.65
CUX1P39880 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC31.59■■■□□ 2.65
CUX1P39880 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC31.59■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms