Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
LMX1BO60663 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
LMX1BO60663 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1BO60663 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC16.63■□□□□ 0.25
LMX1BO60663 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
LMX1BO60663 KIFC3-201ENST00000379655 3427 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.63■□□□□ 0.25
LMX1BO60663 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 UBQLN4P1-201ENST00000461599 1801 ntBASIC16.63■□□□□ 0.25
LMX1BO60663 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
LMX1BO60663 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
LMX1BO60663 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1BO60663 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 AL512353.2-201ENST00000448759 1962 ntBASIC16.62■□□□□ 0.25
LMX1BO60663 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
LMX1BO60663 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LMX1BO60663 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC16.62■□□□□ 0.25
LMX1BO60663 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC16.62■□□□□ 0.25
LMX1BO60663 AP003071.4-201ENST00000562276 1284 ntBASIC16.62■□□□□ 0.25
LMX1BO60663 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LMX1BO60663 CD177P1-201ENST00000606252 935 ntBASIC16.62■□□□□ 0.25
LMX1BO60663 AL121829.2-201ENST00000620908 328 ntBASIC16.62■□□□□ 0.25
LMX1BO60663 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC16.62■□□□□ 0.25
LMX1BO60663 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC16.62■□□□□ 0.25
LMX1BO60663 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
LMX1BO60663 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
LMX1BO60663 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
LMX1BO60663 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1BO60663 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 SAPCD2P4-201ENST00000424595 1171 ntBASIC16.61■□□□□ 0.25
LMX1BO60663 TMPOP1-202ENST00000424642 1267 ntBASIC16.61■□□□□ 0.25
LMX1BO60663 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
LMX1BO60663 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC16.61■□□□□ 0.25
LMX1BO60663 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
LMX1BO60663 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1BO60663 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1BO60663 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
LMX1BO60663 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
LMX1BO60663 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC16.61■□□□□ 0.25
LMX1BO60663 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.61■□□□□ 0.25
LMX1BO60663 RIPK2-201ENST00000220751 2584 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 EPB41L2-211ENST00000525271 2568 ntTSL 2 BASIC16.61■□□□□ 0.25
LMX1BO60663 C19orf25-203ENST00000585675 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
LMX1BO60663 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
LMX1BO60663 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 MMP23A-201ENST00000234610 1017 ntBASIC16.6■□□□□ 0.25
LMX1BO60663 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC16.6■□□□□ 0.25
LMX1BO60663 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LMX1BO60663 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LMX1BO60663 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
LMX1BO60663 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.6■□□□□ 0.25
LMX1BO60663 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LMX1BO60663 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
LMX1BO60663 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC16.6■□□□□ 0.25
LMX1BO60663 AC093525.10-201ENST00000625130 1569 ntBASIC16.6■□□□□ 0.25
LMX1BO60663 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms