Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC17.95■□□□□ 0.46
PROM1O43490 SNORA78-201ENST00000459373 127 ntBASIC17.95■□□□□ 0.46
PROM1O43490 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC17.95■□□□□ 0.46
PROM1O43490 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC17.95■□□□□ 0.46
PROM1O43490 MIR4785-201ENST00000585005 73 ntBASIC17.95■□□□□ 0.46
PROM1O43490 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
PROM1O43490 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 USP39-202ENST00000409025 1946 ntTSL 5 BASIC17.95■□□□□ 0.46
PROM1O43490 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.95■□□□□ 0.46
PROM1O43490 AC006333.2-201ENST00000607957 2099 ntBASIC17.95■□□□□ 0.46
PROM1O43490 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
PROM1O43490 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
PROM1O43490 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC17.95■□□□□ 0.46
PROM1O43490 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC17.94■□□□□ 0.46
PROM1O43490 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC17.94■□□□□ 0.46
PROM1O43490 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
PROM1O43490 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.94■□□□□ 0.46
PROM1O43490 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC17.94■□□□□ 0.46
PROM1O43490 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC17.94■□□□□ 0.46
PROM1O43490 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.94■□□□□ 0.46
PROM1O43490 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC17.94■□□□□ 0.46
PROM1O43490 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC17.94■□□□□ 0.46
PROM1O43490 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
PROM1O43490 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.94■□□□□ 0.46
PROM1O43490 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
PROM1O43490 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 AC096733.2-201ENST00000609937 1394 ntBASIC17.93■□□□□ 0.46
PROM1O43490 FUCA1-201ENST00000374479 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 DHDH-203ENST00000522614 776 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC17.93■□□□□ 0.46
PROM1O43490 MIR4497-201ENST00000583208 89 ntBASIC17.93■□□□□ 0.46
PROM1O43490 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC17.93■□□□□ 0.46
PROM1O43490 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 KRT17P2-201ENST00000300992 1314 ntBASIC17.93■□□□□ 0.46
PROM1O43490 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 SLC25A29-215ENST00000556505 1540 ntTSL 2 BASIC17.93■□□□□ 0.46
PROM1O43490 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC17.93■□□□□ 0.46
PROM1O43490 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
PROM1O43490 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
PROM1O43490 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
PROM1O43490 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
PROM1O43490 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.92■□□□□ 0.46
PROM1O43490 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PROM1O43490 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.92■□□□□ 0.46
PROM1O43490 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC17.92■□□□□ 0.46
PROM1O43490 AC097488.1-201ENST00000507834 756 ntBASIC17.92■□□□□ 0.46
PROM1O43490 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC17.92■□□□□ 0.46
PROM1O43490 SLC25A1P4-201ENST00000567977 778 ntBASIC17.92■□□□□ 0.46
PROM1O43490 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
PROM1O43490 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
PROM1O43490 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms