Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 GXYLT1P4-201ENST00000613576 1192 ntBASIC32.76■■■□□ 2.84
CCDC88BA6NC98 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC88BA6NC98 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC32.76■■■□□ 2.83
CCDC88BA6NC98 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC88BA6NC98 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC88BA6NC98 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 AP005901.3-202ENST00000581653 237 ntBASIC32.75■■■□□ 2.83
CCDC88BA6NC98 GPR32P1-201ENST00000601788 811 ntBASIC32.75■■■□□ 2.83
CCDC88BA6NC98 KRT8P32-201ENST00000512863 1461 ntBASIC32.75■■■□□ 2.83
CCDC88BA6NC98 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC88BA6NC98 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 IGHV3-47-201ENST00000425060 335 ntBASIC32.74■■■□□ 2.83
CCDC88BA6NC98 NAT14-202ENST00000587400 416 ntTSL 5 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC32.74■■■□□ 2.83
CCDC88BA6NC98 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 NR2F1-205ENST00000615873 1427 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 MIR564-202ENST00000385049 94 ntBASIC32.73■■■□□ 2.83
CCDC88BA6NC98 AC104819.1-201ENST00000504587 486 ntBASIC32.73■■■□□ 2.83
CCDC88BA6NC98 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 ABR-204ENST00000543210 1049 ntTSL 2 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 AL592071.1-201ENST00000611956 408 ntBASIC32.73■■■□□ 2.83
CCDC88BA6NC98 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 GUCA1A-205ENST00000541991 1921 ntTSL 5 BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 EXOSC3-201ENST00000327304 1806 ntAPPRIS P1 TSL 1 (best) BASIC32.73■■■□□ 2.83
CCDC88BA6NC98 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 PBK-203ENST00000522944 1499 ntTSL 2 BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 AC091607.1-201ENST00000490318 1060 ntBASIC32.72■■■□□ 2.83
CCDC88BA6NC98 AP003733.1-201ENST00000491725 852 ntBASIC32.72■■■□□ 2.83
CCDC88BA6NC98 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC32.72■■■□□ 2.83
CCDC88BA6NC98 AC125437.2-201ENST00000625180 2167 ntBASIC32.71■■■□□ 2.83
CCDC88BA6NC98 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 IGHGP-201ENST00000390555 1178 ntBASIC32.71■■■□□ 2.83
CCDC88BA6NC98 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 AC090616.6-201ENST00000582640 721 ntBASIC32.71■■■□□ 2.83
CCDC88BA6NC98 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 AL157384.1-201ENST00000445995 2473 ntBASIC32.71■■■□□ 2.83
CCDC88BA6NC98 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC32.71■■■□□ 2.83
CCDC88BA6NC98 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
CCDC88BA6NC98 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.83
CCDC88BA6NC98 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC32.7■■■□□ 2.83
CCDC88BA6NC98 VPS51-217ENST00000639871 243 ntTSL 5 BASIC32.7■■■□□ 2.83
CCDC88BA6NC98 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC32.7■■■□□ 2.83
CCDC88BA6NC98 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.83
CCDC88BA6NC98 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC32.7■■■□□ 2.82
CCDC88BA6NC98 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 TUBA3C-201ENST00000400113 1551 ntAPPRIS P1 TSL 5 BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
CCDC88BA6NC98 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC32.69■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms