Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
SENP3Q9H4L4 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 ZNF43-207ENST00000595461 3399 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 MTUS1-216ENST00000519263 4089 ntTSL 2 BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 MIR561-201ENST00000385216 97 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 AC011998.1-201ENST00000433403 117 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 RNU2-58P-201ENST00000516403 183 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 SNORA4-201ENST00000584302 138 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 AL355297.2-201ENST00000604792 129 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 MIR3653-201ENST00000625572 110 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 AL592182.3-201ENST00000642132 3304 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 PLCB4-203ENST00000378493 5796 ntAPPRIS ALT1 TSL 2 BASIC6.54□□□□□ -1.36
SENP3Q9H4L4 GABRG2-229ENST00000641017 3628 ntBASIC6.54□□□□□ -1.36
SENP3Q9H4L4 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 Y_RNA.258-201ENST00000364613 105 ntBASIC6.53□□□□□ -1.36
SENP3Q9H4L4 RNU6-935P-201ENST00000410371 100 ntBASIC6.53□□□□□ -1.36
SENP3Q9H4L4 snoU13.2-201ENST00000459201 104 ntBASIC6.53□□□□□ -1.36
SENP3Q9H4L4 RN7SL98P-201ENST00000462271 300 ntBASIC6.53□□□□□ -1.36
SENP3Q9H4L4 AC012314.7-201ENST00000619693 93 ntBASIC6.53□□□□□ -1.36
SENP3Q9H4L4 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 POSTN-201ENST00000379742 3071 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC6.53□□□□□ -1.36
SENP3Q9H4L4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC6.52□□□□□ -1.36
SENP3Q9H4L4 MUC12-206ENST00000536621 16321 ntAPPRIS P2 TSL 5 BASIC6.52□□□□□ -1.36
SENP3Q9H4L4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
SENP3Q9H4L4 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC6.52□□□□□ -1.37
SENP3Q9H4L4 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC6.52□□□□□ -1.37
SENP3Q9H4L4 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SENP3Q9H4L4 AC092435.4-201ENST00000623012 4159 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 MIR331-201ENST00000362302 94 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 RNU6-1031P-201ENST00000384773 107 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
SENP3Q9H4L4 AL162151.2-201ENST00000448875 158 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 RN7SL810P-201ENST00000493031 276 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 RNA5SP445-201ENST00000515889 115 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 RNA5SP147-201ENST00000516493 109 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 SNORA70.24-201ENST00000517233 118 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 AC019176.1-201ENST00000518519 225 ntBASIC6.52□□□□□ -1.37
SENP3Q9H4L4 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC6.52□□□□□ -1.37
SENP3Q9H4L4 CC2D2B-210ENST00000636965 3247 ntTSL 5 BASIC6.52□□□□□ -1.37
SENP3Q9H4L4 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 OR10Z1-202ENST00000641002 6323 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 MIR383-201ENST00000362257 73 ntBASIC6.51□□□□□ -1.37
SENP3Q9H4L4 PPP1R11P1-201ENST00000486095 376 ntBASIC6.51□□□□□ -1.37
SENP3Q9H4L4 RNA5SP137-201ENST00000516833 135 ntBASIC6.51□□□□□ -1.37
SENP3Q9H4L4 MIR492-201ENST00000638676 116 ntBASIC6.51□□□□□ -1.37
SENP3Q9H4L4 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 N4BP2L2-IT2-201ENST00000629393 4890 ntBASIC6.51□□□□□ -1.37
SENP3Q9H4L4 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 ABI3BP-215ENST00000495063 3714 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SENP3Q9H4L4 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC6.5□□□□□ -1.37
SENP3Q9H4L4 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3Q9H4L4 MIR548F3-201ENST00000408509 87 ntBASIC6.5□□□□□ -1.37
SENP3Q9H4L4 RNU6ATAC-201ENST00000408749 126 ntBASIC6.5□□□□□ -1.37
SENP3Q9H4L4 RNU6-531P-201ENST00000516694 104 ntBASIC6.5□□□□□ -1.37
SENP3Q9H4L4 MIR3169-201ENST00000578032 83 ntBASIC6.5□□□□□ -1.37
SENP3Q9H4L4 MIR4286-201ENST00000580651 93 ntBASIC6.5□□□□□ -1.37
SENP3Q9H4L4 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3Q9H4L4 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3Q9H4L4 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SENP3Q9H4L4 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC6.5□□□□□ -1.37
SENP3Q9H4L4 RNA5SP453-201ENST00000362503 119 ntBASIC6.49□□□□□ -1.37
SENP3Q9H4L4 RNA5SP366-201ENST00000365454 123 ntBASIC6.49□□□□□ -1.37
SENP3Q9H4L4 RNU6-1077P-201ENST00000410506 102 ntBASIC6.49□□□□□ -1.37
SENP3Q9H4L4 AC090602.1-201ENST00000469695 252 ntBASIC6.49□□□□□ -1.37
SENP3Q9H4L4 UCA1.1-201ENST00000620952 75 ntBASIC6.49□□□□□ -1.37
SENP3Q9H4L4 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
SENP3Q9H4L4 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3Q9H4L4 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
SENP3Q9H4L4 RNU6-23P-201ENST00000363283 107 ntBASIC6.48□□□□□ -1.37
SENP3Q9H4L4 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
SENP3Q9H4L4 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC6.48□□□□□ -1.37
SENP3Q9H4L4 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC6.48□□□□□ -1.37
SENP3Q9H4L4 MIR6867-201ENST00000610636 67 ntBASIC6.48□□□□□ -1.37
SENP3Q9H4L4 AC073869.9-201ENST00000641610 120 ntBASIC6.48□□□□□ -1.37
SENP3Q9H4L4 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
SENP3Q9H4L4 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3Q9H4L4 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3Q9H4L4 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SENP3Q9H4L4 RNU6-520P-201ENST00000384717 104 ntBASIC6.47□□□□□ -1.37
SENP3Q9H4L4 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC6.47□□□□□ -1.37
SENP3Q9H4L4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC6.47□□□□□ -1.37
SENP3Q9H4L4 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.37
SENP3Q9H4L4 FLRT3-202ENST00000378053 4776 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SENP3Q9H4L4 RNU6-461P-201ENST00000364195 107 ntBASIC6.46□□□□□ -1.38
SENP3Q9H4L4 RNU1-109P-201ENST00000383960 147 ntBASIC6.46□□□□□ -1.38
SENP3Q9H4L4 MIR588-201ENST00000384900 83 ntBASIC6.46□□□□□ -1.38
SENP3Q9H4L4 AC069285.2-201ENST00000440210 275 ntBASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 136.7 ms