Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 Y_RNA.609-201ENST00000410669 89 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 AC083863.1-201ENST00000438811 231 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 HMGN2P7-201ENST00000456186 273 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.19□□□□□ -1.9
COL8A1P27658 SNORA4.4-201ENST00000515921 135 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 RNU7-128P-201ENST00000517247 62 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
COL8A1P27658 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
COL8A1P27658 FAS-AS1.1-201ENST00000615327 126 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 AL591424.2-201ENST00000617023 128 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 MIR6079-201ENST00000635807 62 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 AL512310.12-203ENST00000640543 90 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 AC091564.4-201ENST00000533934 2194 ntBASIC3.19□□□□□ -1.9
COL8A1P27658 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.19□□□□□ -1.9
COL8A1P27658 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
COL8A1P27658 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 AF117829.1-206ENST00000621883 3802 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 RNU6-457P-201ENST00000363999 107 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 RNU6-198P-201ENST00000384258 104 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 HMGN2P34-201ENST00000437647 269 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 SNORA71B-202ENST00000439232 272 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 HMGN2P18-201ENST00000450680 270 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 RPL30P14-201ENST00000482744 348 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 RNU6-856P-201ENST00000516959 98 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 AC006023.1-201ENST00000603944 259 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 AL033523.1-201ENST00000605153 153 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 SNORA62.6-201ENST00000606322 83 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 AC103810.7-201ENST00000607821 91 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 MIR486-1-201ENST00000612171 68 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 MIR6076-201ENST00000617521 113 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 AC021613.1-201ENST00000623880 111 ntBASIC3.18□□□□□ -1.9
COL8A1P27658 RNF111-206ENST00000559209 5278 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.18□□□□□ -1.9
COL8A1P27658 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.18□□□□□ -1.9
COL8A1P27658 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
COL8A1P27658 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL8A1P27658 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL8A1P27658 MIR342-201ENST00000362212 99 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 RNA5SP322-201ENST00000363617 119 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 MIR199A2-201ENST00000385289 110 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 SNX2P2-201ENST00000424553 323 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.17□□□□□ -1.9
COL8A1P27658 Z98742.2-201ENST00000431564 187 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC3.17□□□□□ -1.9
COL8A1P27658 AC108729.3-201ENST00000513484 108 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 AC008011.1-201ENST00000545989 227 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 MIR5680-201ENST00000577577 84 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 AC103810.1-201ENST00000579873 453 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 MIR4672-201ENST00000583126 81 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 MIR4762-201ENST00000585261 75 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 Xist_exon1.1-201ENST00000618930 85 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 U4.6-201ENST00000621618 127 ntBASIC3.17□□□□□ -1.9
COL8A1P27658 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC3.17□□□□□ -1.9
COL8A1P27658 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
COL8A1P27658 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL8A1P27658 RNU6-315P-201ENST00000362666 107 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC3.16□□□□□ -1.9
COL8A1P27658 RNU6-524P-201ENST00000384270 107 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 SNORD17-201ENST00000390930 237 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 POLR2J4-204ENST00000418424 324 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AL159169.1-201ENST00000421119 127 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AC107083.1-201ENST00000439643 279 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AP000873.1-201ENST00000463987 400 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AL049830.1-201ENST00000468034 425 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AC004223.1-201ENST00000479840 271 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AC093259.1-201ENST00000509755 300 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 AC093729.1-201ENST00000513074 128 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 RNA5SP208-201ENST00000516156 78 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.16□□□□□ -1.9
COL8A1P27658 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC3.16□□□□□ -1.9
COL8A1P27658 AL137790.1-201ENST00000634283 177 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
COL8A1P27658 CEP170P1-201ENST00000502249 4587 ntBASIC3.16□□□□□ -1.9
COL8A1P27658 KIF21A-203ENST00000541463 4866 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
COL8A1P27658 U8.5-201ENST00000364528 136 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 snoU2-30.1-201ENST00000365012 70 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 Y_RNA.336-201ENST00000365307 109 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 SNORA48.8-201ENST00000391324 134 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 AP000567.1-201ENST00000406413 156 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 AC090844.1-201ENST00000422019 156 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 AL161932.1-201ENST00000437408 146 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 RNU6-539P-201ENST00000516665 103 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 SCARNA3-201ENST00000517097 143 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC3.15□□□□□ -1.91
COL8A1P27658 AP002004.2-201ENST00000531656 154 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 MIR7106-201ENST00000612419 65 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 MIR376B-201ENST00000614515 100 ntBASIC3.15□□□□□ -1.91
COL8A1P27658 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.15□□□□□ -1.91
COL8A1P27658 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 114.9 ms