Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.29□□□□□ -1.88
CNTN3Q9P232 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.29□□□□□ -1.88
CNTN3Q9P232 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CNTN3Q9P232 AC093831.2-201ENST00000624393 3427 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC3.28□□□□□ -1.88
CNTN3Q9P232 Y_RNA.66-201ENST00000362862 102 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 SNORD56.5-201ENST00000364281 72 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 RNU6-755P-201ENST00000364400 103 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 MIR891A-201ENST00000401237 79 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 Y_RNA.617-201ENST00000410920 90 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 AC244505.4-201ENST00000434905 287 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 SSXP5-201ENST00000443473 287 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 SNORA31.26-201ENST00000517250 137 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 AC091178.2-201ENST00000584401 117 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 AL670379.3-201ENST00000605040 251 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 AL359075.3-201ENST00000613288 217 ntBASIC3.28□□□□□ -1.88
CNTN3Q9P232 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CNTN3Q9P232 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CNTN3Q9P232 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.28□□□□□ -1.88
CNTN3Q9P232 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.28□□□□□ -1.88
CNTN3Q9P232 AL391516.1-201ENST00000554380 2449 ntBASIC3.28□□□□□ -1.89
CNTN3Q9P232 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC3.27□□□□□ -1.89
CNTN3Q9P232 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC3.27□□□□□ -1.89
CNTN3Q9P232 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CNTN3Q9P232 RNU6-220P-201ENST00000390919 107 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 RPL32P35-201ENST00000415214 394 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 UBBP3-201ENST00000445497 241 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.27□□□□□ -1.89
CNTN3Q9P232 Y_RNA.714-201ENST00000517065 90 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 RNU1-104P-201ENST00000517280 175 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 RNU2-60P-201ENST00000517290 128 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC3.27□□□□□ -1.89
CNTN3Q9P232 AL353149.1-201ENST00000610667 244 ntBASIC3.27□□□□□ -1.89
CNTN3Q9P232 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC3.27□□□□□ -1.89
CNTN3Q9P232 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.26□□□□□ -1.89
CNTN3Q9P232 Y_RNA.52-201ENST00000362760 96 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 SNORA63.4-201ENST00000362763 126 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 RNU6-1292P-201ENST00000383856 107 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 SRIP3-201ENST00000413200 219 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 SNRPGP10-201ENST00000432323 225 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 RPS26P45-201ENST00000471748 340 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 RN7SL20P-201ENST00000488827 297 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 NDUFA4P2-201ENST00000489989 244 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 RNU6-341P-201ENST00000516973 96 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 EIF4BP1-201ENST00000554881 351 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 AC087685.1-201ENST00000587507 141 ntBASIC3.26□□□□□ -1.89
CNTN3Q9P232 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.26□□□□□ -1.89
CNTN3Q9P232 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.26□□□□□ -1.89
CNTN3Q9P232 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.26□□□□□ -1.89
CNTN3Q9P232 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.26□□□□□ -1.89
CNTN3Q9P232 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.25□□□□□ -1.89
CNTN3Q9P232 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC3.25□□□□□ -1.89
CNTN3Q9P232 RNU6-309P-201ENST00000364573 106 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 SNORD58C-201ENST00000365223 64 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 SNORD24-201ENST00000383884 75 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.25□□□□□ -1.89
CNTN3Q9P232 AC003685.2-201ENST00000422795 395 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC3.25□□□□□ -1.89
CNTN3Q9P232 AC233266.1-201ENST00000454518 96 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 RN7SL75P-201ENST00000461926 281 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 RNU6-56P-201ENST00000516986 93 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 AC007751.1-201ENST00000529260 376 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 AC242852.1-201ENST00000612151 96 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 AC244015.1-201ENST00000622301 99 ntBASIC3.25□□□□□ -1.89
CNTN3Q9P232 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC3.24□□□□□ -1.89
CNTN3Q9P232 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
CNTN3Q9P232 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.24□□□□□ -1.89
CNTN3Q9P232 Y_RNA.346-201ENST00000365385 112 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 SNORA46-201ENST00000384762 135 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 MIR515-2-201ENST00000384883 83 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 MIR515-1-201ENST00000384884 83 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 MIR548A3-201ENST00000385297 97 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 AL139132.1-201ENST00000431587 344 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 AF228730.3-201ENST00000436691 102 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.24□□□□□ -1.89
CNTN3Q9P232 MRPS17P9-201ENST00000511924 393 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 AC091826.1-201ENST00000514065 313 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 RNU1-142P-201ENST00000516682 145 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 RNU6-667P-201ENST00000517186 102 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 RNU7-128P-201ENST00000517247 62 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.24□□□□□ -1.89
CNTN3Q9P232 AC108081.1-201ENST00000604358 221 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 AC007318.2-201ENST00000620999 243 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 MIR6079-201ENST00000635807 62 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 MIR338-201ENST00000636369 67 ntBASIC3.24□□□□□ -1.89
CNTN3Q9P232 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.24□□□□□ -1.89
CNTN3Q9P232 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.24□□□□□ -1.89
CNTN3Q9P232 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC3.23□□□□□ -1.89
CNTN3Q9P232 PRKACB-207ENST00000394838 4294 ntTSL 5 BASIC3.23□□□□□ -1.89
CNTN3Q9P232 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC3.23□□□□□ -1.89
CNTN3Q9P232 Y_RNA.253-201ENST00000364562 112 ntBASIC3.23□□□□□ -1.89
CNTN3Q9P232 SNORA22-201ENST00000383907 134 ntBASIC3.23□□□□□ -1.89
CNTN3Q9P232 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.23□□□□□ -1.89
CNTN3Q9P232 AC107083.1-201ENST00000439643 279 ntBASIC3.23□□□□□ -1.89
CNTN3Q9P232 RNU1-131P-201ENST00000458943 161 ntBASIC3.23□□□□□ -1.89
CNTN3Q9P232 RNU7-94P-201ENST00000459576 63 ntBASIC3.23□□□□□ -1.89
CNTN3Q9P232 RN7SKP19-201ENST00000516016 252 ntBASIC3.23□□□□□ -1.89
CNTN3Q9P232 AL022345.2-201ENST00000606307 135 ntBASIC3.23□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 190.8 ms