Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.23□□□□□ -2.05
TTC3P53804 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.22□□□□□ -2.05
TTC3P53804 RNU6-1289P-201ENST00000384431 106 ntBASIC2.22□□□□□ -2.05
TTC3P53804 SNORA40.18-201ENST00000391200 128 ntBASIC2.22□□□□□ -2.05
TTC3P53804 SNORA26.5-201ENST00000391215 123 ntBASIC2.22□□□□□ -2.05
TTC3P53804 MTCO2P33-201ENST00000402100 465 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AL355497.1-201ENST00000406262 551 ntBASIC2.22□□□□□ -2.05
TTC3P53804 U6atac.2-201ENST00000408644 118 ntBASIC2.22□□□□□ -2.05
TTC3P53804 U3.40-201ENST00000408706 208 ntBASIC2.22□□□□□ -2.05
TTC3P53804 SNORD65B-201ENST00000459126 73 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AC091179.3-201ENST00000474761 144 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AC145146.1-201ENST00000496370 254 ntBASIC2.22□□□□□ -2.05
TTC3P53804 SEM1P1-201ENST00000506694 209 ntBASIC2.22□□□□□ -2.05
TTC3P53804 RNU6-191P-201ENST00000516295 94 ntBASIC2.22□□□□□ -2.05
TTC3P53804 RNU6-1098P-201ENST00000516772 96 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AC105245.1-201ENST00000581934 244 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AL049779.4-201ENST00000604500 156 ntBASIC2.22□□□□□ -2.05
TTC3P53804 RNU2-4P-201ENST00000606190 192 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AL391903.3-201ENST00000612158 163 ntBASIC2.22□□□□□ -2.05
TTC3P53804 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AC010329.5-201ENST00000623497 2174 ntBASIC2.22□□□□□ -2.05
TTC3P53804 VTRNA1-1-201ENST00000363120 99 ntBASIC2.22□□□□□ -2.05
TTC3P53804 RNU4-84P-201ENST00000364200 139 ntBASIC2.22□□□□□ -2.05
TTC3P53804 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.22□□□□□ -2.05
TTC3P53804 AC009414.1-201ENST00000427200 443 ntBASIC2.22□□□□□ -2.05
TTC3P53804 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.22□□□□□ -2.05
TTC3P53804 AC005562.2-201ENST00000618264 111 ntBASIC2.22□□□□□ -2.05
TTC3P53804 snoZ196.1-201ENST00000625269 89 ntBASIC2.22□□□□□ -2.05
TTC3P53804 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.21□□□□□ -2.05
TTC3P53804 RNU6-1272P-201ENST00000362776 107 ntBASIC2.21□□□□□ -2.06
TTC3P53804 MIR1294-201ENST00000408503 142 ntBASIC2.21□□□□□ -2.06
TTC3P53804 RNU6-107P-201ENST00000516643 102 ntBASIC2.21□□□□□ -2.06
TTC3P53804 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.21□□□□□ -2.06
TTC3P53804 MIR4744-201ENST00000581563 82 ntBASIC2.21□□□□□ -2.06
TTC3P53804 AC008873.1-201ENST00000625051 138 ntBASIC2.21□□□□□ -2.06
TTC3P53804 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.21□□□□□ -2.06
TTC3P53804 RNU6-103P-201ENST00000363686 107 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNY1P5-201ENST00000383890 115 ntBASIC2.2□□□□□ -2.06
TTC3P53804 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.2□□□□□ -2.06
TTC3P53804 U8.19-201ENST00000459095 133 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-221P-201ENST00000459541 99 ntBASIC2.2□□□□□ -2.06
TTC3P53804 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.2□□□□□ -2.06
TTC3P53804 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC2.2□□□□□ -2.06
TTC3P53804 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-1219P-201ENST00000516143 112 ntBASIC2.2□□□□□ -2.06
TTC3P53804 Y_RNA.676-201ENST00000516393 96 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-965P-201ENST00000516721 96 ntBASIC2.2□□□□□ -2.06
TTC3P53804 MIR5688-201ENST00000580619 83 ntBASIC2.2□□□□□ -2.06
TTC3P53804 MIR3133-201ENST00000583157 78 ntBASIC2.2□□□□□ -2.06
TTC3P53804 AL356280.1-201ENST00000603614 379 ntBASIC2.2□□□□□ -2.06
TTC3P53804 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.2□□□□□ -2.06
TTC3P53804 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
TTC3P53804 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.2□□□□□ -2.06
TTC3P53804 AC080128.1-201ENST00000474389 1917 ntBASIC2.2□□□□□ -2.06
TTC3P53804 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.2□□□□□ -2.06
TTC3P53804 RNU1-17P-201ENST00000363022 152 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-899P-201ENST00000363947 107 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-312P-201ENST00000364629 107 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-144P-201ENST00000383951 107 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU6-959P-201ENST00000384671 107 ntBASIC2.2□□□□□ -2.06
TTC3P53804 MIR583-201ENST00000384846 75 ntBASIC2.2□□□□□ -2.06
TTC3P53804 CYCSP49-201ENST00000420810 319 ntBASIC2.2□□□□□ -2.06
TTC3P53804 RNU7-57P-201ENST00000459540 60 ntBASIC2.2□□□□□ -2.06
TTC3P53804 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.2□□□□□ -2.06
TTC3P53804 SNORA4.4-201ENST00000515921 135 ntBASIC2.2□□□□□ -2.06
TTC3P53804 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.2□□□□□ -2.06
TTC3P53804 POLR3GP1-201ENST00000594073 261 ntBASIC2.2□□□□□ -2.06
TTC3P53804 AC005972.2-201ENST00000604690 348 ntBASIC2.2□□□□□ -2.06
TTC3P53804 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC2.2□□□□□ -2.06
TTC3P53804 AC009487.4-201ENST00000624969 3585 ntBASIC2.2□□□□□ -2.06
TTC3P53804 AL159152.1-201ENST00000635019 2587 ntBASIC2.19□□□□□ -2.06
TTC3P53804 U3.8-201ENST00000363675 217 ntBASIC2.19□□□□□ -2.06
TTC3P53804 Y_RNA.287-201ENST00000364853 94 ntBASIC2.19□□□□□ -2.06
TTC3P53804 SNORD116-13-201ENST00000384408 92 ntBASIC2.19□□□□□ -2.06
TTC3P53804 RNU6-1235P-201ENST00000384559 107 ntBASIC2.19□□□□□ -2.06
TTC3P53804 AL355796.1-201ENST00000406706 323 ntBASIC2.19□□□□□ -2.06
TTC3P53804 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.19□□□□□ -2.06
TTC3P53804 RNU6-498P-201ENST00000459468 107 ntBASIC2.19□□□□□ -2.06
TTC3P53804 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.19□□□□□ -2.06
TTC3P53804 MIR4724-201ENST00000579485 89 ntBASIC2.19□□□□□ -2.06
TTC3P53804 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC2.19□□□□□ -2.06
TTC3P53804 AC104465.1-201ENST00000611365 139 ntBASIC2.19□□□□□ -2.06
TTC3P53804 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
TTC3P53804 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
TTC3P53804 ZNF271P-202ENST00000465539 1970 ntBASIC2.19□□□□□ -2.06
TTC3P53804 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
TTC3P53804 RNU6-1305P-201ENST00000364353 104 ntBASIC2.18□□□□□ -2.06
TTC3P53804 RNU4-10P-201ENST00000364383 140 ntBASIC2.18□□□□□ -2.06
TTC3P53804 Y_RNA.441-201ENST00000384123 112 ntBASIC2.18□□□□□ -2.06
TTC3P53804 MIR548B-201ENST00000385247 97 ntBASIC2.18□□□□□ -2.06
TTC3P53804 FO393413.1-201ENST00000402892 195 ntBASIC2.18□□□□□ -2.06
TTC3P53804 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.18□□□□□ -2.06
TTC3P53804 RNU1-117P-201ENST00000517041 158 ntBASIC2.18□□□□□ -2.06
TTC3P53804 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.18□□□□□ -2.06
TTC3P53804 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.18□□□□□ -2.06
TTC3P53804 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
TTC3P53804 Y_RNA.304-201ENST00000365011 112 ntBASIC2.18□□□□□ -2.06
TTC3P53804 RPL30P4-201ENST00000429309 333 ntBASIC2.18□□□□□ -2.06
TTC3P53804 TOMM22P2-201ENST00000430735 237 ntBASIC2.18□□□□□ -2.06
TTC3P53804 AC093259.1-201ENST00000509755 300 ntBASIC2.18□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms