Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC3.82□□□□□ -1.8
GFRA3O60609 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.82□□□□□ -1.8
GFRA3O60609 AC091152.2-201ENST00000591628 2569 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 AC092435.4-201ENST00000623012 4159 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 SNORD31B-201ENST00000364977 69 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 MIR633-201ENST00000384821 98 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 MIR802-201ENST00000390235 94 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 MIR548G-201ENST00000408442 89 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 RNA5SP239-201ENST00000410218 129 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 RNU6-519P-201ENST00000410590 108 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 RNU6-998P-201ENST00000515894 101 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 AL162274.2-201ENST00000614406 332 ntBASIC3.82□□□□□ -1.8
GFRA3O60609 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC3.82□□□□□ -1.8
GFRA3O60609 CSRNP3-202ENST00000342316 11684 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
GFRA3O60609 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
GFRA3O60609 MSTN-201ENST00000260950 2822 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
GFRA3O60609 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
GFRA3O60609 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.82□□□□□ -1.8
GFRA3O60609 NCOA1-203ENST00000395856 6828 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
GFRA3O60609 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
GFRA3O60609 AL360270.1-201ENST00000440689 2359 ntTSL 2 BASIC3.81□□□□□ -1.8
GFRA3O60609 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.81□□□□□ -1.8
GFRA3O60609 SEC23A-202ENST00000537403 4215 ntTSL 2 BASIC3.81□□□□□ -1.8
GFRA3O60609 CNTN6-201ENST00000350110 3814 ntAPPRIS P1 TSL 1 (best) BASIC3.81□□□□□ -1.8
GFRA3O60609 RNU1-57P-201ENST00000384491 166 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 MIR181B2-201ENST00000385004 89 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 MIR921-201ENST00000401133 56 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 SNORA3C-201ENST00000408792 125 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 Y_RNA.596-201ENST00000410462 109 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 AL139254.1-201ENST00000421114 376 ntTSL 3 BASIC3.81□□□□□ -1.8
GFRA3O60609 AC244636.1-201ENST00000421152 228 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 AC017083.1-201ENST00000428093 483 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 RNU6-928P-201ENST00000516876 104 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 SCARNA3-201ENST00000517097 143 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 RNU1-30P-201ENST00000606575 163 ntBASIC3.81□□□□□ -1.8
GFRA3O60609 AL513314.2-204ENST00000619187 459 ntTSL 5 BASIC3.81□□□□□ -1.8
GFRA3O60609 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC3.81□□□□□ -1.8
GFRA3O60609 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC3.81□□□□□ -1.8
GFRA3O60609 AP003122.5-201ENST00000527668 3766 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
GFRA3O60609 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.8□□□□□ -1.8
GFRA3O60609 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
GFRA3O60609 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.8□□□□□ -1.8
GFRA3O60609 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.8□□□□□ -1.8
GFRA3O60609 MIR449A-201ENST00000362113 91 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 SNORA5B-201ENST00000363786 132 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 SNORD66.1-201ENST00000391230 76 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 RNA5SP293-201ENST00000410527 113 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 U3.44-201ENST00000458938 192 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 RNU7-2P-201ENST00000516096 62 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 RNU6-1108P-201ENST00000516308 104 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 ZNF861P-201ENST00000588126 639 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 NEAT1_2.1-201ENST00000620525 105 ntBASIC3.8□□□□□ -1.8
GFRA3O60609 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.8□□□□□ -1.8
GFRA3O60609 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
GFRA3O60609 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
GFRA3O60609 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.79□□□□□ -1.8
GFRA3O60609 AC104662.3-202ENST00000507794 4055 ntTSL 2 BASIC3.79□□□□□ -1.8
GFRA3O60609 OR6A2-202ENST00000641196 4295 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
GFRA3O60609 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC3.79□□□□□ -1.8
GFRA3O60609 Y_RNA.173-201ENST00000363776 113 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 MIR520H-201ENST00000385126 88 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 MIR1261-201ENST00000408659 82 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 RN7SKP111-201ENST00000410349 271 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 AC023141.4-201ENST00000412031 328 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 SNORD4B-201ENST00000459083 72 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 RNU7-45P-201ENST00000459460 63 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 COX7A2-206ENST00000472311 325 ntTSL 2 BASIC3.79□□□□□ -1.8
GFRA3O60609 Y_RNA.660-201ENST00000516002 120 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 RNU6-90P-201ENST00000606352 106 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 MIR7106-201ENST00000612419 65 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 MIR7112-201ENST00000616126 65 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 MIR1297-201ENST00000637311 77 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
GFRA3O60609 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
GFRA3O60609 NFIB-210ENST00000543693 7622 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
GFRA3O60609 RXFP1-205ENST00000448688 3861 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
GFRA3O60609 AC007656.2-201ENST00000624902 4547 ntBASIC3.79□□□□□ -1.8
GFRA3O60609 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.79□□□□□ -1.8
GFRA3O60609 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC3.79□□□□□ -1.8
GFRA3O60609 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.79□□□□□ -1.8
GFRA3O60609 STXBP4-201ENST00000376352 15590 ntAPPRIS P1 TSL 2 BASIC3.78□□□□□ -1.8
GFRA3O60609 PTRH2-203ENST00000470557 4114 ntAPPRIS P3 BASIC3.78□□□□□ -1.8
GFRA3O60609 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
GFRA3O60609 RNA5SP399-201ENST00000364003 117 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 SNORA27-201ENST00000384323 126 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 RNU6-1241P-201ENST00000384536 107 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 MIR635-201ENST00000384830 98 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 AL445490.2-201ENST00000440492 441 ntTSL 3 BASIC3.78□□□□□ -1.8
GFRA3O60609 RPS29P28-201ENST00000446439 141 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 S100A11P2-201ENST00000467589 312 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 RNU6-807P-201ENST00000516805 107 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 SNORD19.2-201ENST00000516978 73 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 AC022695.1-201ENST00000522089 237 ntBASIC3.78□□□□□ -1.8
GFRA3O60609 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
GFRA3O60609 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.78□□□□□ -1.8
GFRA3O60609 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
GFRA3O60609 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
GFRA3O60609 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms