Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.86□□□□□ -1.95
USP39Q53GS9 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
USP39Q53GS9 RNU6-1010P-201ENST00000362757 107 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 RNY1P11-201ENST00000363759 113 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 MIR9-1-201ENST00000385198 89 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AC010154.1-201ENST00000425857 269 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AC009414.1-201ENST00000427200 443 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AC092427.1-202ENST00000430569 476 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC2.86□□□□□ -1.95
USP39Q53GS9 AC245047.8-201ENST00000456455 284 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 RNU7-141P-201ENST00000459304 62 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AC092991.1-201ENST00000477176 376 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 RNU6-659P-201ENST00000516454 104 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 RNU1-117P-201ENST00000517041 158 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AC105137.2-201ENST00000569073 466 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 AL391903.3-201ENST00000612158 163 ntBASIC2.86□□□□□ -1.95
USP39Q53GS9 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP39Q53GS9 RNU6-859P-201ENST00000362728 107 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 RNU6-407P-201ENST00000365280 104 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 Y_RNA.341-201ENST00000365341 102 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 SNORA18.2-201ENST00000383865 132 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 Y_RNA.456-201ENST00000384232 111 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 RNU6-748P-201ENST00000384648 107 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 MIR1261-201ENST00000408659 82 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 AC006461.1-201ENST00000412637 326 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC2.85□□□□□ -1.95
USP39Q53GS9 RPPH1-2P-201ENST00000516688 293 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 SNORD19.2-201ENST00000516978 73 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 AC091544.4-201ENST00000555268 342 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 AC103810.1-201ENST00000579873 453 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 MIR5006-201ENST00000583027 110 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.85□□□□□ -1.95
USP39Q53GS9 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC2.85□□□□□ -1.95
USP39Q53GS9 ZNF702P-202ENST00000434269 1966 ntBASIC2.85□□□□□ -1.95
USP39Q53GS9 FTX-214ENST00000638437 12267 ntTSL 5 BASIC2.84□□□□□ -1.95
USP39Q53GS9 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC2.84□□□□□ -1.95
USP39Q53GS9 U3.9-201ENST00000363823 204 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 Y_RNA.229-201ENST00000364347 113 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP39Q53GS9 RNU6-643P-201ENST00000384018 107 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 Y_RNA.563-201ENST00000384707 108 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 RNU6-19P-201ENST00000384718 107 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 RNU6-855P-201ENST00000410395 104 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.84□□□□□ -1.95
USP39Q53GS9 TOMM22P2-201ENST00000430735 237 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 RPS29P6-201ENST00000438196 145 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.84□□□□□ -1.95
USP39Q53GS9 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.84□□□□□ -1.95
USP39Q53GS9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.84□□□□□ -1.95
USP39Q53GS9 AC107626.1-201ENST00000471084 183 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 RNU4-57P-201ENST00000515980 135 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 RNU2-44P-201ENST00000516795 194 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.84□□□□□ -1.95
USP39Q53GS9 MIR5688-201ENST00000580619 83 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 RNU6-91P-201ENST00000607774 107 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 TUG1_4.1-201ENST00000619464 181 ntBASIC2.84□□□□□ -1.95
USP39Q53GS9 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.84□□□□□ -1.95
USP39Q53GS9 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.84□□□□□ -1.96
USP39Q53GS9 RNU6-834P-201ENST00000362367 110 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 RNU6-199P-201ENST00000362954 107 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 RNU6-768P-201ENST00000384683 107 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 MIR15B-201ENST00000385045 98 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 MIR548B-201ENST00000385247 97 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 RNU6-460P-201ENST00000391158 108 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 AL138827.1-201ENST00000402666 306 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.83□□□□□ -1.96
USP39Q53GS9 AL513328.1-201ENST00000446460 224 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 AC145146.1-201ENST00000496370 254 ntBASIC2.83□□□□□ -1.96
USP39Q53GS9 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC2.83□□□□□ -1.96
USP39Q53GS9 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.83□□□□□ -1.96
USP39Q53GS9 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC2.83□□□□□ -1.96
USP39Q53GS9 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.83□□□□□ -1.96
USP39Q53GS9 AL161431.1-201ENST00000618966 4205 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 RNU6-1205P-201ENST00000363625 106 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 U3.8-201ENST00000363675 217 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 Y_RNA.251-201ENST00000364551 99 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 MIR181B1-201ENST00000385240 110 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 AL606845.1-201ENST00000404881 255 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.82□□□□□ -1.96
USP39Q53GS9 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.82□□□□□ -1.96
USP39Q53GS9 AL121914.1-201ENST00000450188 156 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 RPS3P1-201ENST00000456781 192 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2.82□□□□□ -1.96
USP39Q53GS9 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC2.82□□□□□ -1.96
USP39Q53GS9 AP001340.1-201ENST00000624405 217 ntBASIC2.82□□□□□ -1.96
USP39Q53GS9 SLC25A46-204ENST00000504098 2345 ntTSL 5 BASIC2.81□□□□□ -1.96
USP39Q53GS9 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.81□□□□□ -1.96
USP39Q53GS9 Y_RNA.525-201ENST00000384570 113 ntBASIC2.81□□□□□ -1.96
USP39Q53GS9 RNU6-1228P-201ENST00000391014 107 ntBASIC2.81□□□□□ -1.96
USP39Q53GS9 RNU2-49P-201ENST00000410666 184 ntBASIC2.81□□□□□ -1.96
USP39Q53GS9 AC027176.1-201ENST00000560204 514 ntBASIC2.81□□□□□ -1.96
USP39Q53GS9 MIR3646-201ENST00000578301 84 ntBASIC2.81□□□□□ -1.96
USP39Q53GS9 AC025754.2-201ENST00000606491 432 ntBASIC2.81□□□□□ -1.96
USP39Q53GS9 SNHG14-215ENST00000551631 4008 ntTSL 5 BASIC2.81□□□□□ -1.96
USP39Q53GS9 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
USP39Q53GS9 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.8□□□□□ -1.96
USP39Q53GS9 SNORD114-19-201ENST00000363072 75 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 U8.7-201ENST00000364940 136 ntBASIC2.8□□□□□ -1.96
USP39Q53GS9 RNU6-429P-201ENST00000384582 108 ntBASIC2.8□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 143 ms